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Available signature matrix for deconvoluting my bulk data using CIBERSORTX
bulk seq snRNA deconvolution CIBERSORTX
updated 7 weeks ago by • 0 • written 7 weeks ago by ▴ 70
1
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4
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736
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STAR aligned BAM files
genome_aligned STAR BAM files transcripts
updated 3 months ago by 45k • written 3 months ago by ▴ 70
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1
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703
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Comment: Comment: Plotting of genes using tpm matrix
updated 3 months ago by 22k • written 3 months ago by ▴ 70
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0
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4.0k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
3 months ago by rajdeepboral00 ▴ 70
4
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4
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703
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Plotting of genes using tpm matrix
normalization TPM boxplot
updated 3 months ago by 22k • written 3 months ago by ▴ 70
2
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2
replies
583
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Y-axis break in Volcano Plot
Volcano_Plot Enhanced_Volcano
updated 4 months ago by 3.4k • written 4 months ago by ▴ 70
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0
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856
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Comment: Comment: Isoform analysis after quantification with Salmon/Star
4 months ago by rajdeepboral00 ▴ 70
6
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3
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856
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Isoform analysis after quantification with Salmon/Star
STAR Salmon Isoform analysis
4 months ago by rajdeepboral00 ▴ 70
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1
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735
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Comment: Comment: GSEA analysis in R
4 months ago by rajdeepboral00 ▴ 70
1
vote
3
replies
735
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GSEA analysis in R
R ranked_list GSEA
updated 4 months ago by 89k • written 4 months ago by ▴ 70
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1
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1.1k
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NF core rna-seq pipeline
nf-core nextflow pipeline rnaseq
updated 5 months ago by 154k • written 5 months ago by ▴ 70
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0
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1.7k
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Comment: Comment: RNASeq bulk transcriptomics analysis
5 months ago by rajdeepboral00 ▴ 70
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1
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1.7k
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Comment: Comment: RNASeq bulk transcriptomics analysis
5 months ago by rajdeepboral00 ▴ 70
0
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1
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1.7k
views
Comment: Comment: RNASeq bulk transcriptomics analysis
5 months ago by rajdeepboral00 ▴ 70
0
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1
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1.7k
views
Comment: Comment: RNASeq bulk transcriptomics analysis
5 months ago by rajdeepboral00 ▴ 70
0
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1
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1.7k
views
Comment: Comment: RNASeq bulk transcriptomics analysis
5 months ago by rajdeepboral00 ▴ 70
3
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11
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1.7k
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RNASeq bulk transcriptomics analysis
RNASeq Trimgalore genecounts STAR fastqc
5 months ago by rajdeepboral00 ▴ 70
1
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2
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825
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Trimmomatic command
STAR RNASeq Trimmomatic
updated 5 months ago by 15k • written 5 months ago by ▴ 70
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0
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1.5k
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Comment: Comment: DESeq2 analysis
9 months ago by rajdeepboral00 ▴ 70
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0
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1.5k
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Comment: Comment: DESeq2 analysis
9 months ago by rajdeepboral00 ▴ 70
7
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5
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1.5k
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DESeq2 analysis
DESeq2 RNASeq interaction
updated 9 months ago by 5.8k • written 9 months ago by ▴ 70
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3
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1.1k
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Comment: Comment: Gene expression of a particular gene
9 months ago by rajdeepboral00 ▴ 70
2
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5
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1.1k
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Gene expression of a particular gene
gene-expression DESeq2 RNASeq
updated 9 months ago by 5.8k • written 9 months ago by ▴ 70
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3
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864
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What is the next step after getting the raw counts matrix for RNA-seq data?
DESEq2 transriptomics RNA-seq
updated 9 months ago by 103k • written 9 months ago by ▴ 70
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0
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1.1k
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Comment: Comment: Unannotated reads through STAR
9 months ago by rajdeepboral00 ▴ 70
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1
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1.1k
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Comment: Comment: Unannotated reads through STAR
9 months ago by rajdeepboral00 ▴ 70
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0
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1.1k
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Comment: Comment: Unannotated reads through STAR
9 months ago by rajdeepboral00 ▴ 70
0
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6
replies
1.1k
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Unannotated reads through STAR
STAR IGV Unannotated-reads
9 months ago by rajdeepboral00 ▴ 70
0
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1
reply
575
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biomaRt R package
R biomaRt transcript_id ensembl
updated 9 months ago by ▴ 570 • written 9 months ago by ▴ 70
0
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2
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799
views
RSEM and STAR
STAR RNASeq RSEM
9 months ago by rajdeepboral00 ▴ 70
0
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0
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799
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Comment: Comment: RSEM and STAR
9 months ago by rajdeepboral00 ▴ 70
1
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0
replies
2.2k
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Comment: Comment: Mouse genome featureCounts
9 months ago by rajdeepboral00 ▴ 70
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1
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2.2k
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Comment: Comment: Mouse genome featureCounts
9 months ago by rajdeepboral00 ▴ 70
4
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13
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2.2k
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Mouse genome featureCounts
GRCm39 RNA-seq featureCounts
9 months ago by rajdeepboral00 ▴ 70
0
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1
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2.2k
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Comment: Comment: Mouse_genome_featureCounts
updated 9 months ago by 154k • written 9 months ago by ▴ 70
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2
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2.2k
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Comment: Comment: Mouse_genome_featureCounts
9 months ago by rajdeepboral00 ▴ 70
0
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1
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2.2k
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Comment: Comment: Mouse_genome_featureCounts
9 months ago by rajdeepboral00 ▴ 70
0
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1
reply
1.3k
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Comment: Comment: MHV_A59 featureCounts
9 months ago by rajdeepboral00 ▴ 70
0
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1
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1.3k
views
Comment: Comment: MHV_A59 featureCounts
10 months ago by rajdeepboral00 ▴ 70
1
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5
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1.3k
views
MHV_A59 featureCounts
featureCounts RNASeq MHVA59
updated 9 months ago by 154k • written 10 months ago by ▴ 70
1
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1
reply
882
views
rRNA contamination in RNASeq fdata
contamination rRNA RNASeq
updated 10 months ago by ★ 7.8k • written 10 months ago by ▴ 70
0
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1
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1.2k
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Comment: Comment: No gene name
10 months ago by rajdeepboral00 ▴ 70
1
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4
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1.2k
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No gene name
Ensembl biomart gene_name deseq2
updated 10 months ago by ★ 2.2k • written 10 months ago by ▴ 70
0
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0
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1.3k
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Comment: Comment: Multimapping Reads to be counted or not
updated 10 months ago by 154k • written 10 months ago by ▴ 70
1
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6
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1.3k
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Multimapping Reads to be counted or not
lowcounts featureCounts RNASeq Multimapping
updated 10 months ago by 154k • written 10 months ago by ▴ 70
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1
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1.3k
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Comment: Comment: Multimapping Reads to be counted or not
10 months ago by rajdeepboral00 ▴ 70
0
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0
replies
829
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Comment: Comment: Sequence duplication in fastqc
11 months ago by rajdeepboral00 ▴ 70
0
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2
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829
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Sequence duplication in fastqc
fastqc duplication RNASeq
11 months ago by rajdeepboral00 ▴ 70
0
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1
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2.0k
views
Comment: Comment: Counts after using feature counts is low
11 months ago by rajdeepboral00 ▴ 70
4
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11
replies
2.0k
views
Counts after using feature counts is low
hisat2 featureCounts lowcounts
updated 11 months ago by 154k • written 11 months ago by ▴ 70
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