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Genetic correlation with related individuals
genetic correlation BOLT-REML GCTA LDSC GWAS
4.4 years ago by alesssia ▴ 580
6
votes
1
reply
1.3k
views
Computational resources for WGS variant calling
WGS bwakit GATK variant calling OpenStack
updated 4.5 years ago by 22k • written 4.6 years ago by ▴ 580
2
votes
2
replies
1.3k
views
Chromosome X GWAS in related individuals
GWAS Chromosome X related individuals GEMMA
updated 5.3 years ago by 88k • written 5.3 years ago by ▴ 580
0
votes
1
reply
1.2k
views
Can I run the EBI metagenomics pipeline locally?
metagenomics pipeline EBI
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 580
1
vote
4
replies
1.9k
views
Metagenome Read Simulators
metagenomics simulation WGS BBmap
6.4 years ago by alesssia ▴ 580
13
votes
13
replies
6.6k
views
Metagenomics data: trimming and decontamination
metagenomics Trim Galore deconseq sequencing
updated 7.4 years ago by 20k • written 7.4 years ago by ▴ 580
14
votes
35
replies
11k
views
8 follow
Converting large (compressed and unsorted) BAM files to fastq
BAM fatsq alignment bedtools picard
updated 3.0 years ago by 144k • written 7.7 years ago by ▴ 580
1
vote
4
replies
4.2k
views
Conditional analysis with duplicate variant IDs in PLINK
plink GWAS conditional analysis
updated 8.0 years ago by 4.3k • written 8.0 years ago by ▴ 580
3
votes
7
replies
7.9k
views
Plot with locuszoom and chr:pos SNPs
SNP GWAS locuszoom
updated 24 months ago by 44k • written 8.5 years ago by ▴ 580
2
votes
3
replies
4.1k
views
Recommendation on tutorials/books for longitudinal data analysis
longitudinal-data book
updated 16 months ago by 44k • written 8.8 years ago by ▴ 580
2
votes
2
replies
3.5k
views
Sanger Imputation Service - The input file sanity check failed
bcftools Imputation VCF Sanger
updated 21 months ago by 44k • written 9.0 years ago by ▴ 580
6
votes
4
replies
9.9k
views
How to remove batch effect from RNA-seq data?
combat RNA-Seq SVA DEseq2
updated 20 months ago by 44k • written 9.0 years ago by ▴ 580
1
vote
4
replies
2.6k
views
Regions of the genome that may include CNVs
UCSC CNV
updated 19 months ago by 44k • written 9.1 years ago by ▴ 580
0
votes
0
replies
1.7k
views
Is it possible to extract the C component of the ACE model from an AE model?
GCTA Mx ACE AE twin
updated 17 months ago by 44k • written 9.2 years ago by ▴ 580
0
votes
0
replies
2.8k
views
DESeq2 - Normalisation factors
DESeq2 normalisation RNA-Seq
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 580
2
votes
7
replies
4.0k
views
DESeq2: invalid class “GRangesList” object
DESeq2 bioconductor r
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 580
4
votes
2
replies
3.4k
views
RNA-Seq: using GLMM to detect differentially expressed genes
GLMM differential-expression RNA-Seq
updated 2.3 years ago by 44k • written 9.4 years ago by ▴ 580
7
votes
13
replies
4.2k
views
DESeq2: can I correct for relatedness when using data from multiplex families?
DESeq2 RNA-Seq Multiplex-families
updated 2.3 years ago by 44k • written 9.5 years ago by ▴ 580
5
votes
6
replies
6.9k
views
lmekin -- Model fails because of the Cholesky decomposition -- but chol works!
LMM lmekin R
updated 2.3 years ago by 44k • written 9.5 years ago by ▴ 580
0
votes
1
reply
6.2k
views
PLINK: Unrecognized flag '--list-duplicate-vars'
IBD BEAGLE PLINK
updated 2.3 years ago by 44k • written 9.5 years ago by ▴ 580
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