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Genetic correlation with related individuals
genetic correlation
BOLT-REML
GCTA
LDSC
GWAS
4.7 years ago by
alesssia
▴ 580
6
votes
1
reply
1.3k
views
Computational resources for WGS variant calling
WGS
bwakit
GATK
variant calling
OpenStack
updated 4.9 years ago by
Jeremy Leipzig
22k • written 5.0 years ago by
alesssia
▴ 580
2
votes
2
replies
1.4k
views
Chromosome X GWAS in related individuals
GWAS
Chromosome X
related individuals
GEMMA
updated 5.7 years ago by
Kevin Blighe
88k • written 5.7 years ago by
alesssia
▴ 580
0
votes
1
reply
1.2k
views
Can I run the EBI metagenomics pipeline locally?
metagenomics
pipeline
EBI
updated 6.7 years ago by
h.mon
35k • written 6.7 years ago by
alesssia
▴ 580
1
vote
4
replies
2.0k
views
Metagenome Read Simulators
metagenomics
simulation
WGS
BBmap
6.7 years ago by
alesssia
▴ 580
13
votes
13
replies
7.2k
views
Metagenomics data: trimming and decontamination
metagenomics
Trim Galore
deconseq
sequencing
updated 7.8 years ago by
Brian Bushnell
20k • written 7.8 years ago by
alesssia
▴ 580
14
votes
35
replies
12k
views
8 follow
Converting large (compressed and unsorted) BAM files to fastq
BAM
fatsq
alignment
bedtools
picard
updated 3.4 years ago by
GenoMax
148k • written 8.1 years ago by
alesssia
▴ 580
1
vote
4
replies
4.4k
views
Conditional analysis with duplicate variant IDs in PLINK
plink
GWAS
conditional analysis
updated 8.4 years ago by
LauferVA
4.5k • written 8.4 years ago by
alesssia
▴ 580
3
votes
7
replies
8.2k
views
Plot with locuszoom and chr:pos SNPs
SNP
GWAS
locuszoom
updated 2.4 years ago by
Ram
44k • written 8.9 years ago by
alesssia
▴ 580
2
votes
3
replies
4.2k
views
Recommendation on tutorials/books for longitudinal data analysis
longitudinal-data
book
updated 20 months ago by
Ram
44k • written 9.2 years ago by
alesssia
▴ 580
2
votes
2
replies
3.6k
views
Sanger Imputation Service - The input file sanity check failed
bcftools
Imputation
VCF
Sanger
updated 2.1 years ago by
Ram
44k • written 9.4 years ago by
alesssia
▴ 580
6
votes
4
replies
10k
views
How to remove batch effect from RNA-seq data?
combat
RNA-Seq
SVA
DEseq2
updated 2.1 years ago by
Ram
44k • written 9.4 years ago by
alesssia
▴ 580
1
vote
4
replies
2.7k
views
Regions of the genome that may include CNVs
UCSC
CNV
updated 24 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
0
votes
0
replies
1.8k
views
Is it possible to extract the C component of the ACE model from an AE model?
GCTA
Mx
ACE
AE
twin
updated 22 months ago by
Ram
44k • written 9.6 years ago by
alesssia
▴ 580
0
votes
0
replies
2.9k
views
DESeq2 - Normalisation factors
DESeq2
normalisation
RNA-Seq
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
2
votes
7
replies
4.1k
views
DESeq2: invalid class “GRangesList” object
DESeq2
bioconductor
r
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
4
votes
2
replies
3.5k
views
RNA-Seq: using GLMM to detect differentially expressed genes
GLMM
differential-expression
RNA-Seq
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
7
votes
13
replies
4.4k
views
DESeq2: can I correct for relatedness when using data from multiplex families?
DESeq2
RNA-Seq
Multiplex-families
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
alesssia
▴ 580
5
votes
6
replies
7.0k
views
lmekin -- Model fails because of the Cholesky decomposition -- but chol works!
LMM
lmekin
R
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
0
votes
1
reply
6.4k
views
PLINK: Unrecognized flag '--list-duplicate-vars'
IBD
BEAGLE
PLINK
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
alesssia
▴ 580
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