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6
votes
6
replies
4.3k
views
10x to cloupe
single-cell-transcriptomics
10x
11 days ago by
firestar
★ 1.6k
1
vote
0
replies
4.3k
views
Answer:
Answer: 10x to cloupe
11 days ago by
firestar
★ 1.6k
0
votes
1
reply
3.1k
views
Comment:
Comment: How to include spatial coordinate data into anndata within scanpy
4 months ago by
firestar
★ 1.6k
0
votes
0
replies
522
views
Which zUMIs output to use for differential gene expression?
zumis
rnaseq
smartseq3
single-cell
8 months ago by
firestar
★ 1.6k
3
votes
6
replies
5.1k
views
h5ad cellxgene to R
single-cell
h5
cellxgene
anndata
R
9 months ago by
firestar
★ 1.6k
0
votes
0
replies
748
views
Comment:
Comment: fastq_screen error: Failed to calculate read length
13 months ago by
firestar
★ 1.6k
0
votes
1
reply
748
views
Comment:
Comment: fastq_screen error: Failed to calculate read length
13 months ago by
firestar
★ 1.6k
3
votes
5
replies
748
views
fastq_screen error: Failed to calculate read length
fastq_screen
13 months ago by
firestar
★ 1.6k
0
votes
0
replies
606
views
Seurat analysis without ribosomal genes
single-cell
transcriptomics
seurat
13 months ago by
firestar
★ 1.6k
1
vote
0
replies
1.1k
views
Comment:
Comment: Tools/pipeline for analysis of smart-seq3 data
15 months ago by
firestar
★ 1.6k
2
votes
0
replies
1.2k
views
Tutorial:
Analysis of Smart-Seq3 data with kallisto-bustools
single-cell
kallisto
transcriptomics
smart-seq3
pipeline
updated 5 months ago by
Ali
• 0 • written 15 months ago by
firestar
★ 1.6k
3
votes
2
replies
1.1k
views
Tools/pipeline for analysis of smart-seq3 data
single-cell
transcriptomics
15 months ago by
firestar
★ 1.6k
0
votes
1
reply
791
views
Comment:
Comment: Differential transcript expression / differential isoform expression tool tutori
15 months ago by
firestar
★ 1.6k
2
votes
3
replies
791
views
Differential transcript expression / differential isoform expression tool tutorial
RNA-seq
updated 15 months ago by
Ram
43k • written 15 months ago by
firestar
★ 1.6k
2
votes
2
replies
5.1k
views
Answer:
Answer: h5ad cellxgene to R
9 months ago by
firestar
★ 1.6k
0
votes
0
replies
5.1k
views
Comment:
Comment: h5ad cellxgene to R
15 months ago by
firestar
★ 1.6k
0
votes
0
replies
1.2k
views
Comment:
Comment: Running nf-core rnaseq with smart-seq3 data
16 months ago by
firestar
★ 1.6k
0
votes
2
replies
1.2k
views
Comment:
Comment: Running nf-core rnaseq with smart-seq3 data
16 months ago by
firestar
★ 1.6k
5
votes
4
replies
1.2k
views
Running nf-core rnaseq with smart-seq3 data
smart-seq3
nf-core
nextflow
16 months ago by
firestar
★ 1.6k
3
votes
7
replies
4.1k
views
6 follow
Cellranger count pipestance failed: The read lengths are incompatible with all the chemistries
10x
cellranger
single-cell
updated 16 months ago by
GenoMax
141k • written 22 months ago by
firestar
★ 1.6k
4
votes
5
replies
1.1k
views
6 follow
Exon counts do not match gene and transcript counts
salmon
rnaseq
nf-core
featurecounts
exon
updated 18 months ago by
jared.andrews07
★ 16k • written 18 months ago by
firestar
★ 1.6k
0
votes
0
replies
2.9k
views
Comment:
Comment: CellRanger runs into error when running fastq files from SRA
20 months ago by
firestar
★ 1.6k
0
votes
1
reply
2.9k
views
Comment:
Comment: CellRanger runs into error when running fastq files from SRA
20 months ago by
firestar
★ 1.6k
0
votes
1
reply
2.9k
views
Comment:
Comment: CellRanger runs into error when running fastq files from SRA
20 months ago by
firestar
★ 1.6k
0
votes
2
replies
2.9k
views
Comment:
Comment: CellRanger runs into error when running fastq files from SRA
20 months ago by
firestar
★ 1.6k
3
votes
12
replies
2.9k
views
CellRanger runs into error when running fastq files from SRA
cellranger
10x
single-cell
sra
20 months ago by
firestar
★ 1.6k
0
votes
0
replies
4.1k
views
Comment:
Comment: Cellranger count pipestance failed: The read lengths are incompatible with all t
22 months ago by
firestar
★ 1.6k
0
votes
0
replies
1.2k
views
Comment:
Comment: Find clusters using marker genes
2.2 years ago by
firestar
★ 1.6k
1
vote
3
replies
1.2k
views
Find clusters using marker genes
seurat
single-cell
cell-typing
sc-rnaseq
20 months ago by
firestar
★ 1.6k
1
vote
0
replies
1.2k
views
Answer:
Answer: Find clusters using marker genes
20 months ago by
firestar
★ 1.6k
0
votes
1
reply
1.3k
views
Comment:
Comment: Cell ranger reads do not match Seurat reads
2.4 years ago by
firestar
★ 1.6k
2
votes
3
replies
1.3k
views
Cell ranger reads do not match Seurat reads
10x
cellranger
seurat
updated 2.4 years ago by
swbarnes2
14k • written 2.4 years ago by
firestar
★ 1.6k
3
votes
6
replies
1.4k
views
Gene names to Protein (cell surface markers) mapping
cell
transcriptomics
surface
marker
proteomics
2.4 years ago by
firestar
★ 1.6k
1
vote
0
replies
1.4k
views
Answer:
Answer: Gene names to Protein (cell surface markers) mapping
2.4 years ago by
firestar
★ 1.6k
0
votes
0
replies
1.4k
views
Comment:
Comment: Gene names to Protein (cell surface markers) mapping
2.5 years ago by
firestar
★ 1.6k
0
votes
1
reply
1.4k
views
Comment:
Comment: Gene to Protein mapping
2.5 years ago by
firestar
★ 1.6k
0
votes
0
replies
710
views
Comment:
Comment: Odd-looking cell cycle scores in scRNA-seq data
2.5 years ago by
firestar
★ 1.6k
0
votes
1
reply
2.9k
views
Answer:
Answer: Remove contamination across cell clusters
2.5 years ago by
firestar
★ 1.6k
6
votes
1
reply
2.4k
views
Answer:
Answer: Clustering resolution for scRNA-seq
2.6 years ago by
firestar
★ 1.6k
0
votes
0
replies
2.8k
views
Comment:
Comment: Bad volcano plot
2.6 years ago by
firestar
★ 1.6k
4
votes
4
replies
2.8k
views
Bad volcano plot
diferential-gene-expression
rna-seq
sc-rnaseq
updated 2.6 years ago by
m.sadman.sakib
▴ 120 • written 2.6 years ago by
firestar
★ 1.6k
0
votes
1
reply
2.5k
views
Comment:
A: TMM normalized TPM
3.2 years ago by
firestar
★ 1.6k
0
votes
0
replies
2.5k
views
Comment:
C: TMM normalized TPM
3.2 years ago by
firestar
★ 1.6k
4
votes
12
replies
2.5k
views
TMM normalized TPM
RNA-Seq
3.2 years ago by
firestar
★ 1.6k
0
votes
0
replies
2.5k
views
Comment:
C: TMM normalized TPM
3.2 years ago by
firestar
★ 1.6k
0
votes
1
reply
2.5k
views
Comment:
C: TMM normalized TPM
3.2 years ago by
firestar
★ 1.6k
0
votes
2
replies
2.5k
views
Comment:
C: Gene length corrected TMM normalized data
3.2 years ago by
firestar
★ 1.6k
0
votes
0
replies
6.7k
views
Comment:
C: Seurat: Assay to use for differential expression in an integrated data
3.2 years ago by
firestar
★ 1.6k
2
votes
2
replies
6.7k
views
Seurat: Assay to use for differential expression in an integrated data
seurat
10x
single-cell
RNA-Seq
3.2 years ago by
firestar
★ 1.6k
0
votes
0
replies
3.1k
views
Comment:
C: Merging integrated datasets
3.2 years ago by
firestar
★ 1.6k
187 results • Page
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