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6
votes
3
replies
7.2k
views
Fasta to axt - KaKs Calculator
bash perl R python KaKs
updated 2.5 years ago by 43k • written 9.0 years ago by ▴ 360
2
votes
4
replies
2.6k
views
Trouble with BioMart Perl API installation
perl biomart ensembl api
updated 21 months ago by 43k • written 8.5 years ago by ▴ 360
2
votes
7
replies
4.0k
views
RepeatModeler cannot be run in parallel
RepeatModeler RepeatMasker
updated 5.7 years ago by • 0 • written 7.7 years ago by ▴ 360
4
votes
12
replies
1.6k
views
Get number of available genomes per taxon - NCBI
ncbi genome
5.9 years ago by tlorin ▴ 360
2
votes
4
replies
2.2k
views
Fungi genomes: which database should I use?
fungi genome blast ensembl jgi
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 360
5
votes
9
replies
12k
views
NCBI blast remote on specific species
ncbi
updated 6.2 years ago by ▴ 300 • written 7.7 years ago by ▴ 360
2
votes
8
replies
5.0k
views
Minimal TPM threshold for qPCR measure of gene expression
qpcr RNA-Seq TPM kallisto tximport
6.5 years ago by tlorin ▴ 360
14
votes
7
replies
11k
views
Principal Component Analysis: How many most variable genes should I take?
RNA-Seq DESeq2
updated 6.5 years ago by ★ 2.1k • written 6.5 years ago by ▴ 360
10
votes
2
replies
8.5k
views
Difference between heatmap using Euclidian distance and Poisson distance
deseq2 RNA-Seq poisson heatmap
updated 6.6 years ago by 87k • written 6.6 years ago by ▴ 360
3
votes
6
replies
4.2k
views
Convert Gene Name to RefSeq ID
RNA-Seq ncbi sequence blast
updated 6.6 years ago by 5.3k • written 6.6 years ago by ▴ 360
3
votes
4
replies
4.4k
views
Cutadapt not trimming adapters in PE mode
cutadapt RNA-Seq
updated 6.9 years ago by 35k • written 6.9 years ago by ▴ 360
6
votes
7
replies
4.8k
views
Mapping RNA-Seq data on genome from another species
hisat2 RNA-Seq genome mapping star
updated 7.0 years ago by 20k • written 7.0 years ago by ▴ 360
2
votes
2
replies
1.5k
views
Fasta to gff with custom set of genes
gff fasta RNA-Seq genome deseq2
updated 7.0 years ago by ★ 3.6k • written 7.0 years ago by ▴ 360
2
votes
2
replies
1.6k
views
Merge "NCBI species" data within Ensembl alignment
ensembl ncbi blast phylogeny
updated 7.5 years ago by 20 • written 7.7 years ago by ▴ 360
2
votes
4
replies
1.8k
views
Understanding NCBI identifiers
ncbi id
7.6 years ago by tlorin ▴ 360
5
votes
3
replies
8.9k
views
Heatmap with categorical variables and with phylogenetic tree in R or Python
python R categorical-data phylogeny heatmap
updated 24 months ago by 43k • written 9.2 years ago by ▴ 360
5
votes
2
replies
4.5k
views
NCBI Blast locally: filter by accession number and NOT by GI number
ncbi
updated 7.7 years ago by 142k • written 7.7 years ago by ▴ 360
0
votes
0
replies
2.3k
views
Slimming or not slimming with Gene Ontology: which tool should be used?
gene-ontology go-annotation
updated 10 months ago by 43k • written 7.7 years ago by ▴ 360
3
votes
4
replies
1.9k
views
Retrieve all predicted cds from NCBI
ncbi blast cds ensembl
7.8 years ago by tlorin ▴ 360
1
vote
1
reply
3.8k
views
Interpreting sliding windows in Ka/Ks analyses
matlab dN-dS RNA-Seq
updated 15 months ago by 43k • written 9.0 years ago by ▴ 360
4
votes
2
replies
2.6k
views
Replace tip names in a newick file
newick
updated 23 months ago by 43k • written 9.1 years ago by ▴ 360
21 results • Page 1 of 1
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