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0
votes
2
replies
3.6k
views
DEG analysis by limma
limma
updated 16 months ago by 43k • written 7.4 years ago by ▴ 220
3
votes
2
replies
1.3k
views
Binary mutation data format
Mutation data TCGA DawnRank R
updated 5.1 years ago by 13k • written 5.1 years ago by ▴ 220
3
votes
3
replies
1.3k
views
Estimating the purity of tumor cells in gene expression microarray data
Microarray cell purity
5.7 years ago by Shamim Sarhadi ▴ 220
0
votes
2
replies
1.2k
views
Longitudinal breast cancer data
Database Longitudinal data Genome tarnscriptome
5.8 years ago by Shamim Sarhadi ▴ 220
4
votes
5
replies
5.7k
views
Cut-off for genesets in GSEA
GSEA
updated 6.4 years ago by ▴ 920 • written 6.5 years ago by ▴ 220
2
votes
1
reply
2.2k
views
Gene set enrichment analysis
GSEA enrichment analysis DEG analysis
6.5 years ago by Shamim Sarhadi ▴ 220
30
votes
8
replies
13k
views
Reporting p.value for my PCA results
PCA gene expression
updated 6.5 years ago by 87k • written 6.5 years ago by ▴ 220
1
vote
3
replies
2.0k
views
gene expression data analysis and batch effect methods
microarray Gene-expression batch-effect
updated 8 days ago by 43k • written 6.9 years ago by ▴ 220
5
votes
11
replies
3.5k
views
The number of cluster in Kmean clustering
statistics
updated 7.2 years ago by 4.1k • written 7.9 years ago by ▴ 220
1
vote
4
replies
3.0k
views
A question about adjust-pvalue in gene expression analysis
Gene expression analysis meta-analysis statistics
7.5 years ago by Shamim Sarhadi ▴ 220
1
vote
1
reply
1.6k
views
Protein modelling with modeller
proteing modeling modeller
7.8 years ago by Shamim Sarhadi ▴ 220
0
votes
1
reply
1.6k
views
CEL file to expressionSet
Affy CEl Expressionset
7.8 years ago by Shamim Sarhadi ▴ 220
0
votes
1
reply
1.3k
views
Which one of protein modeling programs is better?
protein modelling
7.8 years ago by Shamim Sarhadi ▴ 220
0
votes
2
replies
2.2k
views
network analysis of DEGs
network analysis module finder DEG
7.9 years ago by Shamim Sarhadi ▴ 220
3
votes
9
replies
7.6k
views
Error in `[.data.frame`(pData(eset), , symLabel) : undefined columns selected
R
updated 15 months ago by 43k • written 8.9 years ago by ▴ 220
0
votes
3
replies
2.0k
views
access to dataset in insilicodb
R
updated 14 months ago by 43k • written 9.0 years ago by ▴ 220
1
vote
0
replies
2.4k
views
Which plan is more reasonable, gsea on total dataset , on subset of total dataset with DEG or preRanked gsea?
GSEA DEG
updated 8.0 years ago by 13k • written 8.0 years ago by ▴ 220
6
votes
13
replies
3.8k
views
which set of results are more reliable and precise for DEG analysis, limma vs GSEA ?
DEG Limma GSEA
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by ▴ 220
0
votes
0
replies
1.3k
views
Selecting present prob-id after performing pa.calls function from panp package on eSet
pa.calls filtering eSet
8.1 years ago by Shamim Sarhadi ▴ 220
4
votes
4
replies
9.6k
views
cannot allocate vector of size 64.1 Mb
memory managmet
updated 8.1 years ago by 20 • written 8.1 years ago by ▴ 220
0
votes
2
replies
1.6k
views
A rational way for selecting the number of DEG with significant p-value for GSEA
DEG GSEA
updated 8.1 years ago by 8.3k • written 8.1 years ago by ▴ 220
2
votes
5
replies
1.6k
views
protein structure modeling
protein modeling
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by ▴ 220
0
votes
2
replies
1.6k
views
drop levels in eSet pData
eSet subsetting
updated 8.1 years ago by 6.5k • written 8.1 years ago by ▴ 220
1
vote
0
replies
1.6k
views
giving weight to DEG from limma output
GSEA limma DEG
8.1 years ago by Shamim Sarhadi ▴ 220
0
votes
0
replies
1.8k
views
Conversion of Eset to gct file
gct eset
updated 13 months ago by 43k • written 8.1 years ago by ▴ 220
1
vote
2
replies
2.5k
views
subsetting of expressionSet
R bioconductor
updated 8.1 years ago by ▴ 100 • written 8.1 years ago by ▴ 220
2
votes
4
replies
1.8k
views
I'm looking for a filtering method that it does't use genewise variances
R genefilter limma
updated 21 months ago by 43k • written 8.4 years ago by ▴ 220
2
votes
2
replies
1.6k
views
normalizing methods for microarray
R bioconductor statistics
updated 19 months ago by 43k • written 8.6 years ago by ▴ 220
4
votes
5
replies
6.4k
views
sorting my data based on p-value
R statistics
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
3
votes
6
replies
2.4k
views
converting Probs Id to gene name
genome R
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
7
votes
5
replies
3.4k
views
creating a heatmap from ExpressionSet
R
updated 19 months ago by 43k • written 8.7 years ago by ▴ 220
0
votes
1
reply
1.4k
views
what is the best way for crass platform gene expression analysis?
genome R
updated 16 months ago by 43k • written 8.8 years ago by ▴ 220
0
votes
1
reply
1.0k
views
integrate of microarray
software error
9.0 years ago by Shamim Sarhadi ▴ 220
33 results • Page 1 of 1
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