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1.8k
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Answer: A: CRISPER genome wide screen
7.9 years ago by morovatunc ▴ 560
4
votes
4
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3.4k
views
Is okay to apply ANOVA to Log2 transformed data ?
ANOVA Statistics
updated 8.0 years ago by ▴ 940 • written 8.0 years ago by ▴ 560
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2.9k
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Comment: C: homer analysis help
8.1 years ago by morovatunc ▴ 560
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4.5k
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Comment: C: Merging vcf files ?
8.1 years ago by morovatunc ▴ 560
0
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1.6k
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Calculating mutation significance of each location in a BED file.
VCF
8.1 years ago by morovatunc ▴ 560
1
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1
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4.1k
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CRISPR screen Trimming with mageck low mappability
crispr screen trimming mapping
updated 8.1 years ago by 20 • written 8.2 years ago by ▴ 560
0
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1
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2.4k
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Structural Variant Visualisation from VCF source.
RNA-Seq Circos VCF
8.1 years ago by morovatunc ▴ 560
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3.0k
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Comment: C: Any idea about validating bedtools shuffle did what I desired?
8.1 years ago by morovatunc ▴ 560
1
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1
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3.0k
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Comment: C: Any idea about validating bedtools shuffle did what I desired?
8.1 years ago by morovatunc ▴ 560
9
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5
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3.0k
views
Any idea about validating bedtools shuffle did what I desired?
bedtools chip-seq
updated 8.1 years ago by 5.0k • written 8.1 years ago by ▴ 560
0
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1
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52k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
8.1 years ago by morovatunc ▴ 560
0
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0
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6.8k
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Comment: C: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
8.1 years ago by morovatunc ▴ 560
0
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1
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6.8k
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Answer: A: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
8.1 years ago by morovatunc ▴ 560
3
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1
reply
2.7k
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Answer: A: Binding sites of annotated chip-seq peak files
8.1 years ago by morovatunc ▴ 560
1
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4
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3.1k
views
IGV Visualisation Problem
IGV VCF snpsift vcftools
8.1 years ago by morovatunc ▴ 560
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0
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3.1k
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Comment: C: IGV Visualisation Problem
8.1 years ago by morovatunc ▴ 560
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0
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3.1k
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Comment: C: IGV Visualisation Problem
8.1 years ago by morovatunc ▴ 560
0
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6
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5.0k
views
Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
ChIP-Seq Venn
updated 2.1 years ago by 44k • written 9.0 years ago by ▴ 560
1
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1
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1.4k
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Answer: A: Where to find a list of known SNP's for a given genomic region
8.1 years ago by morovatunc ▴ 560
0
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0
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1.4k
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How to favor consistently occurring rare event in CRISPR screen analysis
CRISPR
8.1 years ago by morovatunc ▴ 560
0
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0
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2.4k
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Comment: C: How to obtain peak height values from a bed file?
8.2 years ago by morovatunc ▴ 560
0
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2
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2.4k
views
How to obtain peak height values from a bed file?
bedtools chip-seq
8.2 years ago by morovatunc ▴ 560
0
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0
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2.4k
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Comment: C: Why does UCSC gap definitions disagree with the Ns in reference genome?
8.2 years ago by morovatunc ▴ 560
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1
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1.7k
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Comment: C: SnpSift match overlapping mutations with a given bed file
8.3 years ago by morovatunc ▴ 560
0
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0
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1.3k
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Unlocalized contig visualisation and filtration for bed files.
bedtools Bed
8.3 years ago by morovatunc ▴ 560
0
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1
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1.7k
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Comment: C: SnpSift match overlapping mutations with a given bed file
8.3 years ago by morovatunc ▴ 560
1
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5
replies
1.7k
views
SnpSift match overlapping mutations with a given bed file
snpsift vcftools
8.3 years ago by morovatunc ▴ 560
4
votes
6
replies
4.5k
views
IGV peak Visualation Problem
ChIP-Seq IGv
updated 2.1 years ago by 44k • written 9.0 years ago by ▴ 560
1
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1
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4.3k
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Answer: A: Using SnpEff to extract relevant fields
8.3 years ago by morovatunc ▴ 560
0
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0
replies
1.5k
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Vcftools where is my log file output ?
vcftools
8.3 years ago by morovatunc ▴ 560
1
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0
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6.2k
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Comment: C: Beginner in Bioinformatics / computational biology field
8.3 years ago by morovatunc ▴ 560
1
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0
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6.2k
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Comment: C: Beginner in Bioinformatics / computational biology field
8.3 years ago by morovatunc ▴ 560
0
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0
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2.0k
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Comment: C: removing dbsnp for indel vcf
8.3 years ago by morovatunc ▴ 560
1
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2
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2.0k
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removing dbsnp for indel vcf
vcf
8.3 years ago by morovatunc ▴ 560
0
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0
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2.0k
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VCF quaility score/filter assessment for ICGC vcf (by sanger pipeline)
vcf
8.3 years ago by morovatunc ▴ 560
1
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1
reply
1.5k
views
Coming with a result with many VCF files?
VCF variant-calling mutation-calling
updated 8.3 years ago by ★ 5.2k • written 8.5 years ago by ▴ 560
0
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0
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2.8k
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Comment: C: VCF filtration problem No genotype information
8.4 years ago by morovatunc ▴ 560
0
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5
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2.8k
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VCF filtration problem No genotype information
Vcftools snpEff
updated 8.4 years ago by 44k • written 8.4 years ago by ▴ 560
0
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2
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1.8k
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Comment: C: Increasing widths of the peaks in a bed file from ChIP-seq
8.4 years ago by morovatunc ▴ 560
0
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1
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1.8k
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Comment: C: Increasing widths of the peaks in a bed file from ChIP-seq
8.4 years ago by morovatunc ▴ 560
0
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1
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1.8k
views
Comment: C: Increasing widths of the peaks in a bed file from ChIP-seq
8.4 years ago by morovatunc ▴ 560
0
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0
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1.8k
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Comment: C: Increasing widths of the peaks in a bed file from ChIP-seq
8.4 years ago by morovatunc ▴ 560
4
votes
9
replies
1.8k
views
Increasing widths of the peaks in a bed file from ChIP-seq
ChIP-Seq vcftools mutation calling
updated 8.4 years ago by 104k • written 8.4 years ago by ▴ 560
0
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1
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4.6k
views
Comment: C: GL000201,GL000202... etc What are these?
8.4 years ago by morovatunc ▴ 560
0
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0
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1.5k
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TCGA RNAseq Clustering validation
RNA-Seq
8.4 years ago by morovatunc ▴ 560
0
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0
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1.7k
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Answer: A: how to "dope" a FASTQ file with known variants
8.5 years ago by morovatunc ▴ 560
11
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4
replies
8.2k
views
Visualization of Homer mergePeaks output Venn?
overlap Venn euler HOMER ChIP-Seq
updated 2.1 years ago by 44k • written 9.0 years ago by ▴ 560
0
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1
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2.9k
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Answer: A: Any experience using SomaticSeq for RNAseq SNV?
8.5 years ago by morovatunc ▴ 560
0
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1
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4.6k
views
Comment: C: GL000201,GL000202... etc What are these?
8.5 years ago by morovatunc ▴ 560
0
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0
replies
8.2k
views
Comment: C: Visualization of Homer mergePeaks output Venn?
8.5 years ago by morovatunc ▴ 560
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