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782
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Bedtools genomecov option to keep columns 4-6?
genomecov bed bedtools
updated 5 months ago by • 0 • written 2.8 years ago by ▴ 690
1
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2
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1.8k
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Comment: Comment: Need help to remove NA values from data frame
18 months ago by rioualen ▴ 690
1
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1
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1.8k
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Answer: Answer: Need help to remove NA values from data frame
18 months ago by rioualen ▴ 690
1
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1
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453
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A regex to convert operon names to genes?
regex r gene operon
updated 19 months ago by ★ 2.3k • written 19 months ago by ▴ 690
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0
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2.2k
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Answer: Answer: Where to download a table of operons with genes for E. coli?
19 months ago by rioualen ▴ 690
5
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1
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921
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Answer: Answer: How to combine a data frame with another data frame containing comma-separated v
19 months ago by rioualen ▴ 690
4
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7
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1.5k
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can't run Aracne -- Java error
aracne RNA-Seq network
updated 21 months ago by ▴ 700 • written 2.6 years ago by ▴ 690
1
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7
replies
3.0k
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Using the Homer suite with conda
homer conda bioconda
updated 2.1 years ago by 20 • written 5.8 years ago by ▴ 690
3
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1
reply
1.5k
views
Answer: A: can't run Aracne -- Java error
2.6 years ago by rioualen ▴ 690
0
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0
replies
1.5k
views
Comment: C: can't run Aracne -- Java error
2.6 years ago by rioualen ▴ 690
0
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1
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1.5k
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Comment: C: can't run Aracne -- Java error
2.6 years ago by rioualen ▴ 690
0
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1
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1.4k
views
Comment: C: Generate sequence alignment and heatmap for TF binding sites
3.1 years ago by rioualen ▴ 690
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3
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1.4k
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Generate sequence alignment and heatmap for TF binding sites
alignment ChIP-Seq logo heatmap
updated 3.1 years ago by 9.6k • written 3.1 years ago by ▴ 690
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2
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10k
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Comment: C: Modern software for whole genome alignment visualization
3.2 years ago by rioualen ▴ 690
0
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0
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1.6k
views
Comment: C: Fusing arrays with equal dimmensions
updated 3.2 years ago by 38k • written 7.2 years ago by ▴ 690
1
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1
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1.6k
views
Answer: A: Fusing arrays with equal dimmensions
updated 3.2 years ago by 38k • written 7.2 years ago by ▴ 690
1
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1
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5.8k
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Comment: C: Empty output from MACS2 when using control
updated 3.2 years ago by 38k • written 7.2 years ago by ▴ 690
2
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1
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2.9k
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Answer: A: Looking for ways to download ChIP-seq datasets programmatically in a pipeline
updated 3.3 years ago by 38k • written 7.2 years ago by ▴ 690
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0
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2.8k
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Comment: C: Building sequence logo from uneven sequences
3.8 years ago by rioualen ▴ 690
0
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1
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2.8k
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Comment: C: Building sequence logo from uneven sequences
3.8 years ago by rioualen ▴ 690
1
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10
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2.8k
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Building sequence logo from uneven sequences
logo alignment fasta ggseqlogo weblogo
3.8 years ago by rioualen ▴ 690
0
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0
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2.8k
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Comment: C: Building sequence logo from uneven sequences
3.8 years ago by rioualen ▴ 690
0
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1
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2.8k
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Comment: C: Building sequence logo from uneven sequences
3.8 years ago by rioualen ▴ 690
0
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1
reply
2.8k
views
Comment: C: Building sequence logo from uneven sequences
3.8 years ago by rioualen ▴ 690
0
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0
replies
34k
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Comment: C: Get chromosome sizes from fasta file
updated 3.9 years ago by 38k • written 7.2 years ago by ▴ 690
26
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2
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34k
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Answer: C: Get chromosome sizes from fasta file
updated 3.9 years ago by 38k • written 7.2 years ago by ▴ 690
60
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12
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34k
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10 follow
Get chromosome sizes from fasta file
genome ucsc
updated 4 months ago by • 0 • written 7.2 years ago by ▴ 690
0
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0
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27k
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Comment: C: Trimming adapter sequences - is it necessary?
3.9 years ago by rioualen ▴ 690
0
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2
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27k
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Comment: C: Trimming adapter sequences - is it necessary?
3.9 years ago by rioualen ▴ 690
0
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0
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2.6k
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Comment: C: Download data from GEO/SRA using link
4.0 years ago by rioualen ▴ 690
2
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2
replies
2.6k
views
Download data from GEO/SRA using link
sra fastq geo
updated 4.0 years ago by 127k • written 4.0 years ago by ▴ 690
1
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0
replies
3.6k
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Comment: C: Possible reason for no peaks generated by MACS2
4.4 years ago by rioualen ▴ 690
1
vote
4
replies
1.7k
views
Bedtools window: getting feature from bedfile instead of GFF3 file
bedtools window
updated 5.2 years ago by 34k • written 5.2 years ago by ▴ 690
3
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2
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2.0k
views
GC content biases in RNA-seq data of A.thaliana
RNA-Seq GC Athaliana mapping
5.4 years ago by rioualen ▴ 690
0
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0
replies
10k
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Comment: C: Extract basic info from fastq files in an efficient way?
5.5 years ago by rioualen ▴ 690
0
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0
replies
10k
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Comment: C: Extract basic info from fastq files in an efficient way?
5.5 years ago by rioualen ▴ 690
0
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1
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10k
views
Comment: C: Extract basic info from fastq files in an efficient way?
5.5 years ago by rioualen ▴ 690
13
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8
replies
10k
views
Extract basic info from fastq files in an efficient way?
fastq fastqc
updated 5.5 years ago by 34k • written 5.5 years ago by ▴ 690
2
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0
replies
3.3k
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Answer: A: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
5.5 years ago by rioualen ▴ 690
10
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11
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3.3k
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"Segmentation fault (core dumped)" using sickle for trimming, depending on options used
trimming sickle virtual-machine
5.5 years ago by rioualen ▴ 690
0
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1
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3.3k
views
Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
5.7 years ago by rioualen ▴ 690
1
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1
reply
3.3k
views
Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
5.8 years ago by rioualen ▴ 690
1
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0
replies
3.3k
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Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
5.8 years ago by rioualen ▴ 690
1
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0
replies
3.3k
views
Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
5.8 years ago by rioualen ▴ 690
1
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1
reply
3.3k
views
Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
5.8 years ago by rioualen ▴ 690
7
votes
4
replies
3.2k
views
Merge bed files, keep the peak count
bedtools bedops ChIP-Seq
updated 5.8 years ago by 20 • written 6.8 years ago by ▴ 690
0
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0
replies
3.0k
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Comment: C: Using the Homer suite with conda
5.8 years ago by rioualen ▴ 690
0
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1
reply
3.0k
views
Comment: C: Using the Homer suite with conda
5.8 years ago by rioualen ▴ 690
0
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2
replies
3.0k
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Comment: C: Using the Homer suite with conda
5.8 years ago by rioualen ▴ 690
0
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1
reply
12k
views
Comment: C: Differences between trimming tools: cutadapt, bbduk and sickle
5.9 years ago by rioualen ▴ 690
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