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9
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4
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2.1k
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7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 8 weeks ago by 40k • written 2.1 years ago by ★ 2.4k
10
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1
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1.3k
views
Tool: fastp 0.23.0 released, runs 2x faster, and generates reproducible outputs.
FASTQ
updated 23 months ago by 134k • written 23 months ago by ★ 2.4k
11
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2
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6.7k
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Tool: fastp (the ultra-fast all-in-one FASTQ preprocessing tool) v0.18.0 released, 2X faster, with many new features.
fastp QC
updated 3 months ago by 40k • written 5.2 years ago by ★ 2.4k
10
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1
reply
2.1k
views
Tutorial: introduce a tool for fast identification of SARS-CoV-2 and other microbes from sequencing data
SARS-CoV-2 fastv COVID-19
updated 6 months ago by 40k • written 3.5 years ago by ★ 2.4k
2
votes
1
reply
1.4k
views
Tutorial: A very simple way to detect viruses and microorganisms from mNGS FASTQ data using fastv
SARS-CoV-2 fastv COVID-19 viruses
updated 6 months ago by 40k • written 3.3 years ago by ★ 2.4k
14
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11
replies
5.9k
views
7 follow
Forum: Do you need a deduplication tool for FASTQ data in fastp?
deduplication fastp
updated 3 months ago by 40k • written 4.3 years ago by ★ 2.4k
3
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0
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2.1k
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Answer: A: Machine learning based classification techniques
updated 3.8 years ago by 40k • written 7.4 years ago by ★ 2.4k
0
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0
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5.9k
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Comment: C: Do you need a deduplication tool for FASTQ data in fastp?
4.3 years ago by chen ★ 2.4k
0
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0
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5.9k
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Comment: C: Do you need a deduplication tool for FASTQ data in fastp?
4.3 years ago by chen ★ 2.4k
0
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0
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4.2k
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Answer: A: Find illumina adaptors
4.3 years ago by chen ★ 2.4k
2
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0
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4.4k
views
Answer: A: How to blast a paired end fastq file?
4.3 years ago by chen ★ 2.4k
2
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0
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5.5k
views
Comment: C: help in Language
4.4 years ago by chen ★ 2.4k
0
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1
reply
5.7k
views
Comment: C: very confused with GC bias
4.4 years ago by chen ★ 2.4k
4
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1
reply
5.5k
views
Answer: A: help in Language
4.4 years ago by chen ★ 2.4k
2
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0
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28k
views
Answer: A: Generating consensus sequence from bam file
4.4 years ago by chen ★ 2.4k
0
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1
reply
926
views
Comment: C: How to evaluate correlation for multiple measurements per point?
4.4 years ago by chen ★ 2.4k
0
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1
reply
5.7k
views
Answer: A: very confused with GC bias
4.4 years ago by chen ★ 2.4k
0
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0
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2.3k
views
Comment: C: VisualMSI: detect and visualize microsatellite instability(MSI) from NGS data
4.4 years ago by chen ★ 2.4k
0
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0
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4.0k
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Comment: C: Reduce number of reads from 100M to 50M in the sample from the existing RNA-Seq
4.6 years ago by chen ★ 2.4k
0
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1
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4.0k
views
Answer: A: Reduce number of reads from 100M to 50M in the sample from the existing RNA-Seq
4.6 years ago by chen ★ 2.4k
4
votes
2
replies
3.4k
views
Tutorial: Introduce OpenGene: an open source library for processing NGS data
NGS sequencing Julia OpenGene
updated 6 months ago by 40k • written 7.6 years ago by ★ 2.4k
1
vote
3
replies
2.3k
views
Tool: VisualMSI: detect and visualize microsatellite instability(MSI) from NGS data
MSI Visualization OpenGene Detection
updated 3 months ago by 40k • written 4.9 years ago by ★ 2.4k
3
votes
2
replies
3.1k
views
Answer: A: Programming language for Computational Biology
updated 5.0 years ago by 40k • written 7.6 years ago by ★ 2.4k
1
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0
replies
1.0k
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Comment: C: Can two mates have different file size?
5.1 years ago by chen ★ 2.4k
0
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0
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3.4k
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Comment: C: repaq: compress Illumina FASTQ to be as small as 1/4 of the gzip format.
5.1 years ago by chen ★ 2.4k
6
votes
2
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3.4k
views
Tool: repaq: compress Illumina FASTQ to be as small as 1/4 of the gzip format.
repaq compress FASTQ
updated 3 months ago by 40k • written 5.1 years ago by ★ 2.4k
10
votes
2
replies
7.0k
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Tool: fastp, the ultra-fast FASTQ preprocessing tool, is now on BioConda
fastp
updated 6 months ago by 40k • written 5.7 years ago by ★ 2.4k
0
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0
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10k
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Comment: C: quality trimming with trimmomatic
5.4 years ago by chen ★ 2.4k
0
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0
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4.2k
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Comment: C: gencore: a tool to reduce sequencing noises by generating consensus reads
5.4 years ago by chen ★ 2.4k
1
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1
reply
10k
views
Answer: A: quality trimming with trimmomatic
5.4 years ago by chen ★ 2.4k
0
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0
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4.0k
views
Answer: A: How to tell when NextSeq, HiSeq, and MiSeq are done?
5.4 years ago by chen ★ 2.4k
1
vote
1
reply
4.2k
views
Comment: C: gencore: a tool to reduce sequencing noises by generating consensus reads
5.4 years ago by chen ★ 2.4k
3
votes
4
replies
4.2k
views
Tutorial: gencore: a tool to reduce sequencing noises by generating consensus reads
consensus OpenGene sequencing-noise
updated 4 months ago by 40k • written 5.4 years ago by ★ 2.4k
0
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1
reply
1.6k
views
Answer: A: Trimmomatic usage issue
5.5 years ago by chen ★ 2.4k
6
votes
17
replies
11k
views
7 follow
Can Illumina bcl2fastq use only one index for demultiplexing dual index sequencing data?
bcl2fastq demultiplexing index
updated 16 months ago by 3.7k • written 5.8 years ago by ★ 2.4k
4
votes
1
reply
16k
views
Answer: A: Open Source Bioinformatics projects for beginners
5.6 years ago by chen ★ 2.4k
0
votes
1
reply
2.8k
views
Answer: A: how to adjust phred33 and phred64 in a fastq
5.7 years ago by chen ★ 2.4k
0
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0
replies
2.6k
views
Comment: C: tumor/normal WGS with CNVkit has many small segments with small copy number chan
5.7 years ago by chen ★ 2.4k
5
votes
1
reply
12k
views
Answer: A: what cause poly-G from NextSeq
5.7 years ago by chen ★ 2.4k
0
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0
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2.6k
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Comment: C: String matching algorithms of biological sequences
5.7 years ago by chen ★ 2.4k
1
vote
1
reply
2.6k
views
Answer: A: String matching algorithms of biological sequences
5.7 years ago by chen ★ 2.4k
1
vote
1
reply
4.4k
views
Answer: A: Faster reading sequences from a fastq file
5.7 years ago by chen ★ 2.4k
23
votes
19
replies
6.1k
views
10 follow
Tutorial: MutScan: Detect important mutations by scanning FastQ files directly
fastq mutation cancer target
updated 5 months ago by 40k • written 7.0 years ago by ★ 2.4k
0
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0
replies
7.6k
views
Comment: C: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for f
5.7 years ago by chen ★ 2.4k
19
votes
14
replies
7.6k
views
7 follow
Tool: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
PolyG Quality-Control Filtering Fastq AfterQC
updated 3 months ago by 40k • written 7.4 years ago by ★ 2.4k
1
vote
0
replies
1.2k
views
Comment: C: SAMTOOLS installation errore
5.7 years ago by chen ★ 2.4k
1
vote
0
replies
25k
views
Comment: C: How to remove the empty line in using python
5.7 years ago by chen ★ 2.4k
0
votes
0
replies
25k
views
Comment: C: How to remove the empty line in using python
5.7 years ago by chen ★ 2.4k
2
votes
1
reply
25k
views
Answer: A: How to remove the empty line in using python
5.7 years ago by chen ★ 2.4k
1
vote
0
replies
1.4k
views
Answer: A: kmer Counter using hadoop and gpu
5.7 years ago by chen ★ 2.4k
218 results • Page 1 of 5
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