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How to find number of genes in Agilent Protocol
WES
updated 7.0 years ago by 142k • written 7.0 years ago by ▴ 360
0
votes
1
reply
2.0k
views
Installation of Bioconductor package: lpsymphony
Bioconductor
updated 7.0 years ago by 20 • written 7.2 years ago by ▴ 360
16
votes
3
replies
24k
views
.dict file created by picard and by samtools
next-gen
updated 20 months ago by 43k • written 8.6 years ago by ▴ 360
2
votes
2
replies
4.8k
views
MutSigCV input files
software
7.1 years ago by haiying.kong ▴ 360
0
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1
reply
4.8k
views
Answer: A: MutSigCV input files
7.1 years ago by haiying.kong ▴ 360
0
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0
replies
1.1k
views
Threshold for WES low coverage proportion
WES
7.1 years ago by haiying.kong ▴ 360
0
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0
replies
1.8k
views
Comment: C: What does Entrez_Gene_Id 0 mean?
7.2 years ago by haiying.kong ▴ 360
0
votes
1
reply
1.5k
views
Oncotator Most Recent Version and Data Source
Oncotator
updated 7.2 years ago by 6.2k • written 7.5 years ago by ▴ 360
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0
replies
1.3k
views
Comment: C: Protein Change Annotation from Oncotator
7.2 years ago by haiying.kong ▴ 360
0
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2
replies
1.3k
views
Protein Change Annotation from Oncotator
Oncotator
updated 7.2 years ago by ★ 2.7k • written 7.2 years ago by ▴ 360
0
votes
1
reply
5.3k
views
Comment: C: QC for Whole Exome Sequence Data
7.3 years ago by haiying.kong ▴ 360
2
votes
6
replies
5.3k
views
QC for Whole Exome Sequence Data
WES
updated 2.5 years ago by ★ 9.4k • written 7.3 years ago by ▴ 360
0
votes
0
replies
2.5k
views
Running Oncotator with MuTect2 output
software error
7.4 years ago by haiying.kong ▴ 360
0
votes
0
replies
3.7k
views
Comment: C: Somatic Mutation Identification without Paired Normal Sample
7.4 years ago by haiying.kong ▴ 360
0
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1
reply
3.7k
views
Comment: C: Somatic Mutation Identification without Paired Normal Sample
7.4 years ago by haiying.kong ▴ 360
4
votes
7
replies
3.7k
views
Somatic Mutation Identification without Paired Normal Sample
WES
updated 7.4 years ago by ▴ 450 • written 7.4 years ago by ▴ 360
2
votes
0
replies
1.5k
views
cn.mops for paired whole exome data
sequence
7.5 years ago by haiying.kong ▴ 360
0
votes
1
reply
2.8k
views
sample swapping check with verifyBamID -- FREEMIX CHIPMIX
wes
updated 7.5 years ago by 142k • written 7.5 years ago by ▴ 360
0
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0
replies
2.8k
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Comment: A: sample swapping check with verifyBamID -- FREEMIX CHIPMIX
7.5 years ago by haiying.kong ▴ 360
0
votes
0
replies
4.4k
views
Comment: C: Picard Output is malformed
7.5 years ago by haiying.kong ▴ 360
0
votes
1
reply
4.4k
views
Comment: C: Picard Output is malformed
updated 7.5 years ago by 142k • written 7.5 years ago by ▴ 360
1
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0
replies
4.4k
views
Comment: C: Picard Output is malformed
7.5 years ago by haiying.kong ▴ 360
1
vote
0
replies
4.4k
views
Comment: C: Picard Output is malformed
7.5 years ago by haiying.kong ▴ 360
0
votes
1
reply
4.4k
views
Comment: C: Picard Output is malformed
7.5 years ago by haiying.kong ▴ 360
0
votes
1
reply
4.4k
views
Comment: C: Picard Output is malformed
7.5 years ago by haiying.kong ▴ 360
0
votes
1
reply
4.4k
views
Comment: C: Picard Output is malformed
7.5 years ago by haiying.kong ▴ 360
0
votes
1
reply
4.4k
views
Comment: C: Picard Output is malformed
7.6 years ago by haiying.kong ▴ 360
0
votes
1
reply
4.4k
views
Comment: C: Picard Output is malformed
7.6 years ago by haiying.kong ▴ 360
0
votes
3
replies
2.7k
views
MuTect --- with more stringent parameter settings I got more mutations -- Is this possible
mutect2 software-error
updated 2.3 years ago by 43k • written 7.9 years ago by ▴ 360
0
votes
1
reply
2.3k
views
How to Prepare Input Files for VerifyBamID?
next-gen
updated 7.8 years ago by 20 • written 8.0 years ago by ▴ 360
0
votes
1
reply
2.7k
views
Comment: C: MuTect --- with more stringent parameter settings I got more mutations -- Is thi
7.8 years ago by haiying.kong ▴ 360
2
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1
reply
2.2k
views
Answer: A: SOS -- MuTect is picking up obvious germline mutations
7.9 years ago by haiying.kong ▴ 360
0
votes
2
replies
2.8k
views
MuTect is giving strikingly different results
software error
updated 7.9 years ago by ▴ 990 • written 7.9 years ago by ▴ 360
0
votes
1
reply
3.2k
views
Comment: C: Can I show IGV only with reads of phred score higher than a threshold?
7.9 years ago by haiying.kong ▴ 360
1
vote
3
replies
3.2k
views
Can I show IGV only with reads of phred score higher than a threshold?
IGV
updated 7.9 years ago by 7.5k • written 7.9 years ago by ▴ 360
0
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0
replies
8.1k
views
Answer: A: BWA Suddenly says fail to open file
7.9 years ago by haiying.kong ▴ 360
0
votes
2
replies
8.1k
views
BWA Suddenly says fail to open file
software error
7.9 years ago by haiying.kong ▴ 360
0
votes
0
replies
2.2k
views
Can I use XHMM to detect somatic CNV?
next-gen
7.9 years ago by haiying.kong ▴ 360
2
votes
1
reply
2.0k
views
Duplicates in Whole Exome Sequence Data
whole exome sequence data
updated 8.0 years ago by 7.3k • written 8.0 years ago by ▴ 360
0
votes
0
replies
1.8k
views
Comment: C: How to Assess Paired Sample Data from WES
8.0 years ago by haiying.kong ▴ 360
2
votes
9
replies
1.8k
views
How to Assess Paired Sample Data from WES
next-gen
updated 8.0 years ago by ▴ 940 • written 8.0 years ago by ▴ 360
0
votes
2
replies
1.8k
views
Comment: C: How to Assess Paired Sample Data from WES
8.0 years ago by haiying.kong ▴ 360
1
vote
0
replies
4.4k
views
Comment: C: Picard Output is malformed
8.0 years ago by haiying.kong ▴ 360
6
votes
24
replies
4.4k
views
Picard Output is malformed
next-gen picard
updated 8.0 years ago by 13k • written 8.0 years ago by ▴ 360
0
votes
2
replies
4.4k
views
Comment: C: Picard Output is malformed
updated 8.0 years ago by 13k • written 8.0 years ago by ▴ 360
0
votes
1
reply
4.4k
views
Comment: C: Picard Output is malformed
updated 8.0 years ago by 13k • written 8.0 years ago by ▴ 360
1
vote
1
reply
4.4k
views
Comment: C: Picard Output is malformed
8.0 years ago by haiying.kong ▴ 360
0
votes
0
replies
2.2k
views
Comment: C: IGV for WES (Somatic Mutations)
8.1 years ago by haiying.kong ▴ 360
0
votes
3
replies
2.2k
views
IGV for WES (Somatic Mutations)
next-gen
updated 8.1 years ago by 22k • written 8.1 years ago by ▴ 360
1
vote
2
replies
1.8k
views
Adjusting panel height on IGV
IGV
updated 8.1 years ago by 22k • written 8.1 years ago by ▴ 360
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