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2
votes
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reply
1.6k
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what is difference between -i and -ibam in genomCoverage?
bedtools deeptools bamCoverage genomeCoverage
updated 6.6 years ago by 89k • written 6.6 years ago by ▴ 350
7
votes
8
replies
1.7k
views
Separate lines based on some character?
R linux fasta
updated 6.6 years ago by 12k • written 6.6 years ago by ▴ 350
0
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0
replies
1.7k
views
Comment: C: Separate lines based on some character?
6.6 years ago by star ▴ 350
0
votes
1
reply
1.7k
views
Comment: C: Separate lines based on some character?
6.6 years ago by star ▴ 350
0
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1
reply
7.2k
views
Comment: C: bedtools intersect error?
6.6 years ago by star ▴ 350
9
votes
6
replies
2.0k
views
Merge the same coordinate in a table?
merge intersect bedtools genomics
updated 6.6 years ago by 12k • written 6.6 years ago by ▴ 350
0
votes
0
replies
7.2k
views
Comment: C: bedtools intersect error?
6.6 years ago by star ▴ 350
0
votes
1
reply
7.2k
views
Comment: C: bedtools intersect error?
6.6 years ago by star ▴ 350
0
votes
1
reply
7.2k
views
Comment: C: bedtools intersect error?
6.6 years ago by star ▴ 350
0
votes
1
reply
7.2k
views
Comment: C: bedtools intersect error?
6.6 years ago by star ▴ 350
0
votes
2
replies
7.2k
views
Comment: C: bedtools intersect error?
6.6 years ago by star ▴ 350
12
votes
14
replies
7.2k
views
bedtools intersect error?
ChIP-Seq bedtools intersect
6.6 years ago by star ▴ 350
10
votes
6
replies
8.5k
views
MACS2 option for ATAC seq?
ATAC-seq Peak-calling MACS2 ChIP-seq ENDCODE
6.6 years ago by star ▴ 350
1
vote
1
reply
8.5k
views
Comment: C: MACS2 option for ATAC seq?
6.6 years ago by star ▴ 350
1
vote
0
replies
5.6k
views
Comment: C: shall we consider -- keep-dup all when we removed duplication?
6.6 years ago by star ▴ 350
7
votes
4
replies
5.6k
views
shall we consider -- keep-dup all when we removed duplication?
ChIP-Seq MACS2 duplicate peak-calling
updated 6.6 years ago by 4.2k • written 6.6 years ago by ▴ 350
0
votes
1
reply
3.7k
views
Comment: C: Normalizing ChIP-seq and ATAC-seq data?
6.6 years ago by star ▴ 350
1
vote
5
replies
3.7k
views
Normalizing ChIP-seq and ATAC-seq data?
ChIP-Seq alignment normalization MACS2
6.6 years ago by star ▴ 350
0
votes
1
reply
3.7k
views
Comment: C: Normalizing ChIP-seq and ATAC-seq data?
6.6 years ago by star ▴ 350
8
votes
12
replies
8.2k
views
why fastq-dump doesn`t work?
sra prefetch fastq-dump
updated 6.6 years ago by 89k • written 6.6 years ago by ▴ 350
0
votes
0
replies
8.2k
views
Comment: C: why fastq-dump doesn`t work?
6.6 years ago by star ▴ 350
0
votes
1
reply
8.2k
views
Comment: C: why fastq-dump doesn`t work?
updated 6.6 years ago by 89k • written 6.6 years ago by ▴ 350
0
votes
1
reply
8.2k
views
Comment: C: why fastq-dump doesn`t work?
6.6 years ago by star ▴ 350
0
votes
2
replies
8.2k
views
Comment: C: why fastq-dump doesn`t work?
6.6 years ago by star ▴ 350
0
votes
1
reply
8.2k
views
Comment: C: why fastq-dump doesn`t work?
6.6 years ago by star ▴ 350
0
votes
1
reply
2.6k
views
Comment: C: why reads align to other coordinates?
6.7 years ago by star ▴ 350
0
votes
0
replies
2.6k
views
Comment: C: why reads align to other coordinates?
6.7 years ago by star ▴ 350
0
votes
1
reply
2.6k
views
Comment: C: why reads align to other coordinates?
6.7 years ago by star ▴ 350
0
votes
1
reply
2.6k
views
Comment: C: why reads align to other coordinates?
6.7 years ago by star ▴ 350
0
votes
1
reply
2.6k
views
Comment: C: why reads align to other coordinates?
6.7 years ago by star ▴ 350
0
votes
1
reply
2.6k
views
Comment: C: why reads align to other coordinates?
6.7 years ago by star ▴ 350
10
votes
13
replies
2.6k
views
why reads align to other coordinates?
RNA-Seq alignment bowtie2 align tophat
6.7 years ago by star ▴ 350
4
votes
6
replies
4.5k
views
is there any statistical way to analysis two groups without replications?
statistics geneexpression
updated 6.7 years ago by 22k • written 6.7 years ago by ▴ 350
0
votes
0
replies
4.5k
views
Comment: C: is there any statistical way to analysis two groups without replications?
6.7 years ago by star ▴ 350
0
votes
1
reply
4.5k
views
Comment: C: is there any statistical way to analysis two groups without replications?
6.7 years ago by star ▴ 350
20
votes
5
replies
12k
views
Add `chr` to first column of specific rows?
RNA-Seq R alignment
updated 6.7 years ago by ★ 2.0k • written 6.7 years ago by ▴ 350
0
votes
3
replies
3.0k
views
bowtie2-align exited with value 139 ?
ChIP-Seq RNA-Seq alignment bowtie2 software error
6.8 years ago by star ▴ 350
0
votes
0
replies
3.0k
views
Comment: C: bowtie2-align exited with value 139 ?
6.8 years ago by star ▴ 350
10
votes
4
replies
6.4k
views
How to extract mapping features of multiple samples in one output?
bowtie2 mapping multiqc ChIP-Seq RNA-Seq
updated 6.8 years ago by 35k • written 6.8 years ago by ▴ 350
7
votes
5
replies
7.1k
views
Can be merged biological replicates?
ChIP-Seq MACS2 ATAC-seq RNA-Seq Peak-calling
updated 7.0 years ago by ▴ 240 • written 7.1 years ago by ▴ 350
1
vote
2
replies
2.5k
views
How can find LD between rows (SNPs) two by two?
linkage-Disequilibrium genomics R
updated 2.5 years ago by 45k • written 9.6 years ago by ▴ 350
3
votes
3
replies
3.8k
views
How can get MAF for set of SNPs from each population based on 1000 Genome?
R 1000 Genome hapmap ucsc Ensembl
updated 7.0 years ago by 12k • written 9.5 years ago by ▴ 350
0
votes
1
reply
4.6k
views
How convert q-value to p-value?
R p-value q-value
updated 7.0 years ago by 45k • written 9.6 years ago by ▴ 350
21
votes
10
replies
8.4k
views
6 follow
Extract only rows with main chromosomes (1-22, X, Y) on first column?
linux grep R script
updated 7.1 years ago by 4.2k • written 7.1 years ago by ▴ 350
0
votes
0
replies
2.3k
views
Comment: C: shift direction in ATAC/DNase data?
7.1 years ago by star ▴ 350
3
votes
5
replies
2.3k
views
shift direction in ATAC/DNase data?
ChIP-Seq MACS2 ATAC-seq DNase-seq
7.1 years ago by star ▴ 350
2
votes
2
replies
1.7k
views
why is there still duplication after extracting aligned read exactly 1 time?
RNA-Seq ChIP-Seq alignment duplicate samtools
updated 7.1 years ago by 89k • written 7.1 years ago by ▴ 350
3
votes
3
replies
1.7k
views
How to filter/edit some BED lines.
linux bedtools
updated 7.1 years ago by 20 • written 7.2 years ago by ▴ 350
1
vote
4
replies
1.5k
views
merge multiple data with multiple columns?
linux script
7.1 years ago by star ▴ 350
0
votes
1
reply
1.5k
views
Comment: C: merge multiple data with multiple columns?
7.1 years ago by star ▴ 350
188 results • Page 3 of 4
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