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"htsjdk.samtools.SAMFormatException: Error parsing text SAM file. Not enough fields" wrong message in the chromHMM run
chromHMM SAMFormatException
3.1 years ago by lhaiyan3 ▴ 80
14
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19
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13k
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6 follow
How to use GSVA for the RNA-seq RPKM file
RNA-Seq
updated 2.7 years ago by 87k • written 6.3 years ago by ▴ 80
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0
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879
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Comment: C: how to make the correct RNA-seq count file for cnvkit import-rna command?
updated 3.7 years ago by 141k • written 3.7 years ago by ▴ 80
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879
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Comment: C: how to make the correct RNA-seq count file for cnvkit import-rna command?
updated 3.7 years ago by 141k • written 3.7 years ago by ▴ 80
0
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3
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879
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how to make the correct RNA-seq count file for cnvkit import-rna command?
RNA-Seq
updated 3.7 years ago by 141k • written 3.7 years ago by ▴ 80
0
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0
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1.1k
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Comment: C: import-rna assertion error
3.7 years ago by lhaiyan3 ▴ 80
11
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12
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11k
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10 follow
how to use ESTIMATE to infer tumor purity and stromal score from RNA-seq data?
rna-seq
updated 2.6 years ago by • 0 • written 6.5 years ago by ▴ 80
0
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1
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1.4k
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cnvkit Error message "length of weights should be the same as the number of probes Execution halted"
sequencing cnvkit
updated 4.3 years ago by 9.7k • written 4.3 years ago by ▴ 80
0
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1
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11k
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Answer: A: Create Interval List for Picard CollectRNASeqmetrics
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 80
5
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3
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2.4k
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Which parameter can be used to set up cutoff not to call peaks <150bp for the macs2 broad peak calling
ChIP-Seq macs2
updated 5.1 years ago by 81k • written 5.1 years ago by ▴ 80
0
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1
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2.4k
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Comment: C: Which parameter can be used to set up cutoff not to call peaks <150bp for the ma
5.1 years ago by lhaiyan3 ▴ 80
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0
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4.0k
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Comment: C: Tool to annotate ChIP-Seq peaks (hg19 or mm10) and find neighboring peaks from m
6.0 years ago by lhaiyan3 ▴ 80
0
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0
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2.3k
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How to do the peakcalling for fly spike-in ChIPseq data
ChIP-Seq
updated 6.1 years ago by 20 • written 6.1 years ago by ▴ 80
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0
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1.3k
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ngsplot-how to get multiplot around the IP peak region and the genes nearest to peak region?
ChIP-Seq
6.1 years ago by lhaiyan3 ▴ 80
0
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1
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13k
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Comment: C: How to use GSVA for the RNA-seq RPKM file
6.3 years ago by lhaiyan3 ▴ 80
0
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1
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13k
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Comment: C: How to use GSVA for the RNA-seq RPKM file
updated 6.3 years ago by 87k • written 6.3 years ago by ▴ 80
0
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2
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13k
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Comment: C: How to use GSVA for the RNA-seq RPKM file
6.3 years ago by lhaiyan3 ▴ 80
0
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0
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7.9k
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Comment: C: GSVA on RNAseq data
6.3 years ago by lhaiyan3 ▴ 80
1
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1
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2.7k
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how to extract the RD, AD, VAF information for the normal and tumor samples from the MuTect2 output vcf file?
Exom-seq Mutect2
updated 6.7 years ago by 20 • written 6.7 years ago by ▴ 80
0
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0
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11k
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Comment: C: comparing single cell RNA-seq and bulk RNA-seq results
6.7 years ago by lhaiyan3 ▴ 80
0
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0
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3.7k
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Comment: C: Best way to present the single cell RNA-seq data and bulk RNA-seq expression dat
6.7 years ago by lhaiyan3 ▴ 80
6
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10
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2.2k
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How to analyze the targeted RNA-panel data?
RNA-Seq
updated 6.7 years ago by 35k • written 6.8 years ago by ▴ 80
0
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0
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2.2k
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Comment: C: How to analyze the targeted RNA-panel data?
6.8 years ago by lhaiyan3 ▴ 80
0
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1
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2.2k
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Comment: C: How to analyze the targeted RNA-panel data?
6.8 years ago by lhaiyan3 ▴ 80
0
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1
reply
2.2k
views
Comment: C: How to analyze the targeted RNA-panel data?
6.8 years ago by lhaiyan3 ▴ 80
0
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1
reply
2.2k
views
Comment: C: How to analyze the targeted RNA-panel data?
6.8 years ago by lhaiyan3 ▴ 80
0
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1
reply
2.2k
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Comment: C: How to analyze the targeted RNA-panel data?
6.8 years ago by lhaiyan3 ▴ 80
0
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1
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3.5k
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Comment: C: sciClone:input data wrong
7.3 years ago by lhaiyan3 ▴ 80
0
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1
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2.0k
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Comment: C: only chrM in the varscan2 copynumber output
7.3 years ago by lhaiyan3 ▴ 80
0
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0
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1.9k
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Comment: C: ChrM in the Varscan2 copynumber output
7.3 years ago by lhaiyan3 ▴ 80
0
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3
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2.0k
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only chrM in the varscan2 copynumber output
varscan2 copynumber chrM
updated 7.3 years ago by 47k • written 7.3 years ago by ▴ 80
0
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1
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1.9k
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Comment: C: ChrM in the Varscan2 copynumber output
7.3 years ago by lhaiyan3 ▴ 80
0
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1
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2.4k
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Comment: C: How to convert the bam file to the aligned fasta file and perform the phylogenet
7.4 years ago by lhaiyan3 ▴ 80
0
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3
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2.4k
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How to convert the bam file to the aligned fasta file and perform the phylogenetic analysis?
bam aligned fasta phylogenetic anlysis
7.4 years ago by lhaiyan3 ▴ 80
0
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0
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19k
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Comment: C: Software To Find Overlaps Of Chip-Seq Peaks In Multiple Samples.
7.4 years ago by lhaiyan3 ▴ 80
1
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3
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3.0k
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How to build the STAR Genome index from the .gbk file?
STAR
7.5 years ago by lhaiyan3 ▴ 80
0
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1
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1.7k
views
The plot generated by sciClone
sciClone WES DNAcopy
updated 8.1 years ago by 22k • written 8.1 years ago by ▴ 80
0
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4
replies
1.9k
views
ChrM in the Varscan2 copynumber output
varscan2 copy number
8.1 years ago by lhaiyan3 ▴ 80
38 results • Page 1 of 1
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