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Showing :
questions
21
votes
8
replies
2.8k
views
Approaches for SV calling from De Novo assembly
SV
Assembly
updated 21 months ago by
Ram
43k • written 8.2 years ago by
novice
★ 1.1k
0
votes
2
replies
1.9k
views
Is there an allternative to Affymetrix GTC for Genotyping?
genotyping
microarray
affymetrix
updated 4.3 years ago by
Giulio Genovese
▴ 390 • written 7.8 years ago by
novice
★ 1.1k
0
votes
3
replies
1.2k
views
Any published data with known percentage of virus sequences?
next-gen
metagenomics
5.6 years ago by
novice
★ 1.1k
1
vote
1
reply
2.8k
views
Structural Variation Discovery: Delly's Output
sv
delly
mapq
updated 6.8 years ago by
trausch
★ 1.9k • written 7.2 years ago by
novice
★ 1.1k
0
votes
0
replies
2.1k
views
How does MITObim (or MIRA's mapping mode) call bases in the consensus?
MITObim
MIRA
mapping
updated 21 months ago by
Ram
43k • written 8.2 years ago by
novice
★ 1.1k
0
votes
3
replies
1.2k
views
Extending the BAM index to include mate info
samtools
index
6.9 years ago by
novice
★ 1.1k
2
votes
7
replies
2.6k
views
What tools do you suggest for resolving large insertions?
WGS
SV
updated 6.9 years ago by
d-cameron
★ 2.9k • written 6.9 years ago by
novice
★ 1.1k
2
votes
6
replies
7.7k
views
What does it mean to say "b-allele frequency"?
snp
canvas
updated 7.3 years ago by
jpflorido
• 0 • written 7.6 years ago by
novice
★ 1.1k
0
votes
5
replies
2.0k
views
Faster extraction of reads mapped to a region
samtools
alignment
7.3 years ago by
novice
★ 1.1k
9
votes
7
replies
22k
views
Calculating Variant Allele Frequency
vaf
7.4 years ago by
novice
★ 1.1k
0
votes
12
replies
2.4k
views
Dealing with abnormally high coverage regions
coverage
alignment
7.5 years ago by
novice
★ 1.1k
4
votes
5
replies
2.9k
views
Converting binary GFF3 to text
gff
annotation
7.5 years ago by
novice
★ 1.1k
2
votes
3
replies
2.9k
views
Converting genotype data to SNP calls
SNP
illumina
genotype
updated 7.5 years ago by
Jorge Amigo
14k • written 7.5 years ago by
novice
★ 1.1k
2
votes
4
replies
1.4k
views
Are logr ratios supposed to be normally distributed?
statistics
CNV
updated 7.5 years ago by
Eric T.
★ 2.8k • written 7.5 years ago by
novice
★ 1.1k
3
votes
6
replies
5.4k
views
Comparing WGS, WXS, and SNP Array data
SNP
wgs
updated 7.6 years ago by
charco
▴ 50 • written 7.6 years ago by
novice
★ 1.1k
2
votes
2
replies
1.6k
views
SNP calls all seem to have quality of zero
SNP
samtools
vcf
7.8 years ago by
novice
★ 1.1k
5
votes
3
replies
5.2k
views
Extracting reads mapped to any of multiple references
samtools
alignment
updated 7.8 years ago by
thackl
★ 3.0k • written 7.8 years ago by
novice
★ 1.1k
0
votes
0
replies
1.0k
views
Looking for human mtDNA samples tagged tumor/normal
ncbi
mtDNA
7.9 years ago by
novice
★ 1.1k
0
votes
1
reply
2.4k
views
Is it possible to convert .CHP files to .CEL?
affymetrix
snparray
7.9 years ago by
novice
★ 1.1k
79
votes
16
replies
48k
views
11 follow
How do you cite a tool that doesn't have a publication?
citation
academic
style
updated 8.0 years ago by
Emily
23k • written 8.1 years ago by
novice
★ 1.1k
0
votes
1
reply
1.5k
views
Extracting split-mappings with BWA-SW
bwa
sam
split-mapping
updated 8.1 years ago by
igor
13k • written 8.2 years ago by
novice
★ 1.1k
2
votes
4
replies
2.5k
views
Software for finding breakpoints along the genome
breakpoints
SV
alignment
updated 8.3 years ago by
Erik Wright
▴ 420 • written 8.3 years ago by
novice
★ 1.1k
4
votes
2
replies
1.6k
views
Should I cite components of wrapper scripts?
citation
ethics
updated 21 months ago by
Ram
43k • written 8.3 years ago by
novice
★ 1.1k
0
votes
2
replies
1.7k
views
Need help using ABACAS
ABACAS
Chloroplast
Assembly
updated 21 months ago by
Ram
43k • written 8.3 years ago by
novice
★ 1.1k
8
votes
11
replies
11k
views
BEDtools coverage output
coverage
alignment
bedtools
updated 21 months ago by
Ram
43k • written 8.3 years ago by
novice
★ 1.1k
3
votes
4
replies
4.5k
views
IGV not reading BAM file
IGV
bam
alignment
updated 8.3 years ago by
ablanchetcohen
★ 1.2k • written 8.3 years ago by
novice
★ 1.1k
3
votes
6
replies
2.3k
views
Using the same reads to assemble mitochondria and chloroplast genomes
Assembly
Mapping
mtDNA
updated 8.3 years ago by
Brice Sarver
★ 3.8k • written 8.3 years ago by
novice
★ 1.1k
1
vote
4
replies
5.0k
views
Velvet: What's the relation between kmer coverage and normal coverage?
coverage
velvet
assembly
contigs
updated 21 months ago by
Ram
43k • written 8.4 years ago by
novice
★ 1.1k
0
votes
0
replies
1.4k
views
Looking for a software to detect structural variations while allowing mismatch
structural-variations
alignment
updated 21 months ago by
Ram
43k • written 8.4 years ago by
novice
★ 1.1k
2
votes
2
replies
3.1k
views
Mugsy Error: Can't find delta file....
Mugsy
Assembly
alignment
updated 20 months ago by
Ram
43k • written 8.4 years ago by
novice
★ 1.1k
1
vote
0
replies
3.4k
views
Mauve LCB Meaning
mauve
Assembly
alignment
updated 20 months ago by
Ram
43k • written 8.5 years ago by
novice
★ 1.1k
0
votes
0
replies
1.8k
views
Looking for a genome /draft genome aligner with the these features
mauve
Assembly
alignment
updated 20 months ago by
Ram
43k • written 8.4 years ago by
novice
★ 1.1k
0
votes
2
replies
3.6k
views
Need Help With SyMap Building And MySQL
symap
mysql
multiple
genome
alignment
updated 20 months ago by
Ram
43k • written 8.5 years ago by
novice
★ 1.1k
33 results • Page
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