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0
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0
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459
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software and publicly available datasets for eQTLs?
eqtls
12 months ago by User 7754 ▴ 250
5
votes
19
replies
11k
views
Plot Genes In R Under A Regional Manhattan Plot
r gene plot
updated 4.2 years ago by ★ 3.4k • written 11.8 years ago by ▴ 250
0
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0
replies
3.9k
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Comment: C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 250
0
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1
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3.9k
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Comment: C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 250
0
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1
reply
2.5k
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Comment: C: Enrichment determination from random sampling
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 250
1
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1
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5.2k
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Answer: A: GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 250
0
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0
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2.4k
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Comment: Comment: bedop: output overlap for each region in a file
updated 19 months ago by 43k • written 8.6 years ago by ▴ 250
2
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0
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2.7k
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Answer: A: Is it possible to specify a reference allele while computing LD in Plink?
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 250
0
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1
reply
1.0k
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Find region that full captures association signal
GWAS LD pvalue
updated 4.9 years ago by ▴ 450 • written 4.9 years ago by ▴ 250
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1
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2.7k
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Comment: C: How to compute enrichment of one feature in the other across the genome (log fol
5.0 years ago by User 7754 ▴ 250
0
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1
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2.7k
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Comment: C: How to compute enrichment of one feature in the other across the genome (log fol
5.0 years ago by User 7754 ▴ 250
0
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0
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2.7k
views
Comment: C: How to compute enrichment of one feature in the other across the genome (log fol
5.0 years ago by User 7754 ▴ 250
2
votes
7
replies
2.7k
views
How to compute enrichment of one feature in the other across the genome (log fold, and pvalue)
genome enrichment
5.0 years ago by User 7754 ▴ 250
0
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1
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1.2k
views
Comment: C: Batch download of bed files for all transcription factors associated with a cell
5.0 years ago by User 7754 ▴ 250
2
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3
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1.2k
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Batch download of bed files for all transcription factors associated with a cell type
ChIP-Seq Transcription factors cell-type specific
updated 5.0 years ago by 82k • written 5.0 years ago by ▴ 250
0
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1
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5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
0
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1
reply
5.7k
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Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
17
votes
31
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5.7k
views
Finding the best model for expression data (RNA-Seq counts)
RNA-Seq glm model fit regression
updated 5.1 years ago by 19k • written 5.1 years ago by ▴ 250
1
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2
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5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
1
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0
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5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
1
vote
1
reply
5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
0
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1
reply
5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
0
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1
reply
5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
0
votes
1
reply
5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
0
votes
1
reply
5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
0
votes
1
reply
5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
0
votes
1
reply
5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
0
votes
2
replies
5.7k
views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
5.1 years ago by User 7754 ▴ 250
0
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0
replies
1.2k
views
Empirical p-value after sampling matching distribution in R
R empirical p-value sampling binning
5.2 years ago by User 7754 ▴ 250
0
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0
replies
7.2k
views
Comment: C: Bedtools Error: Type checker found wrong number of fields while tokenizing data
5.5 years ago by User 7754 ▴ 250
4
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5
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7.2k
views
Bedtools Error: Type checker found wrong number of fields while tokenizing data line.
bedtools
updated 5.5 years ago by 35k • written 5.5 years ago by ▴ 250
0
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1
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7.2k
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Comment: C: Bedtools Error: Type checker found wrong number of fields while tokenizing data
5.5 years ago by User 7754 ▴ 250
0
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0
replies
970
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GenomicRanges based on indices or more conditions, and add column from match
genomicRanges overlaps R
5.5 years ago by User 7754 ▴ 250
3
votes
2
replies
2.5k
views
Get indices from GenomicRanges reduce function
GenomicRanges reduce R
updated 5.6 years ago by 11k • written 5.6 years ago by ▴ 250
1
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1
reply
2.2k
views
Comment: C: R reduce across multiple ranges by row
5.6 years ago by User 7754 ▴ 250
0
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1
reply
2.2k
views
Comment: C: R reduce across multiple ranges by row
5.6 years ago by User 7754 ▴ 250
4
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9
replies
2.2k
views
R reduce across multiple ranges by row
genomicranges R ranges reduce
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 250
0
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0
replies
2.2k
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Comment: C: R reduce across multiple ranges by row
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 250
3
votes
2
replies
985
views
R package to annotate and explore effect of biases in RNA Seq
R RNA-Seq annotation
updated 5.7 years ago by 35k • written 5.7 years ago by ▴ 250
0
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1
reply
1.4k
views
Comment: C: Understanding HiChIP data and interactions
5.7 years ago by User 7754 ▴ 250
2
votes
3
replies
1.4k
views
Understanding HiChIP data and interactions
HiChIP
updated 5.7 years ago by 104k • written 5.7 years ago by ▴ 250
5
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4
replies
5.2k
views
GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
R GenomicFeatures
updated 2.4 years ago by 43k • written 8.6 years ago by ▴ 250
2
votes
2
replies
3.6k
views
[SOLVED] Trying to apply overlap to each row of a "GRangesList"
R loop apply
updated 19 months ago by 43k • written 8.6 years ago by ▴ 250
0
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0
replies
3.3k
views
Comment: C: Convert INDEL format for use in Annovar
7.6 years ago by User 7754 ▴ 250
0
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1
reply
3.3k
views
Comment: C: Convert INDEL format for use in Annovar
7.6 years ago by User 7754 ▴ 250
2
votes
5
replies
3.3k
views
Convert INDEL format for use in Annovar
annovar indel annotation insertion-deletion
updated 7.6 years ago by 13k • written 7.6 years ago by ▴ 250
4
votes
1
reply
2.7k
views
Is it possible to specify a reference allele while computing LD in Plink?
Plink allele
updated 19 months ago by 43k • written 8.6 years ago by ▴ 250
0
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0
replies
1.9k
views
IMPUTE2 reference allele: same as matrixEQTL?
SNP imputation impute2 matrixEQTL
7.9 years ago by User 7754 ▴ 250
0
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0
replies
3.4k
views
Comment: C: bedtools intersectBed and GRanges countOverlaps
8.0 years ago by User 7754 ▴ 250
4
votes
2
replies
3.4k
views
bedtools intersectBed and GRanges countOverlaps
R bed bedtools GenomicRanges
updated 8.0 years ago by 35k • written 8.0 years ago by ▴ 250
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