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10
votes
17
replies
3.1k
views
How do one analyze data from SMART-Seq stranded kit (v4)?
single-cell smart-seq
updated 13 months ago by ★ 5.9k • written 14 months ago by ★ 1.8k
0
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0
replies
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
2
replies
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
407
views
bamComparing ChIp-Seq samples with strange coverage between chipped and Input
normalization bamCompare deepTools
updated 10 months ago by 43k • written 14 months ago by ★ 1.8k
3
votes
4
replies
2.5k
views
STAR aligner can't map too short reads
ribo-seq star
updated 15 months ago by 19k • written 15 months ago by ★ 1.8k
1
vote
1
reply
917
views
Comment: Comment: How to calculate the offset for a riboseq experiment
17 months ago by Assa Yeroslaviz ★ 1.8k
4
votes
3
replies
917
views
How to calculate the offset for a riboseq experiment
sequencing p-site riboseq offset
updated 16 months ago by ▴ 350 • written 17 months ago by ★ 1.8k
0
votes
0
replies
1.2k
views
Comment: Comment: How to interpret the nine-square plot from mageckFlute
17 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
1.2k
views
Comment: Comment: How to interpret the nine-square plot from mageckFlute
17 months ago by Assa Yeroslaviz ★ 1.8k
5
votes
4
replies
1.2k
views
How to interpret the nine-square plot from mageckFlute
mageck mageckFlute squareView scatterplot
17 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
814
views
Comment: Comment: Need help understanding GEO data structure
17 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
814
views
Comment: Comment: Need help understanding GEO data structure
17 months ago by Assa Yeroslaviz ★ 1.8k
1
vote
5
replies
814
views
Need help understanding GEO data structure
Run-Selector GEO gene-expression-omnibus
updated 17 months ago by 141k • written 17 months ago by ★ 1.8k
4
votes
2
replies
583
views
How to extract min and max values of a gene from different columns
group_by tibble tidyverse
updated 18 months ago by 14k • written 18 months ago by ★ 1.8k
0
votes
0
replies
552
views
Comment: Comment: expanding a table by duplicating rows of a specific pattern
18 months ago by Assa Yeroslaviz ★ 1.8k
3
votes
2
replies
552
views
expanding a table by duplicating rows of a specific pattern
tidyyverse dplyr R data.frame
18 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
4.0k
views
Comment: Comment: Dealing with nanopore fast5 files compressed with vbz
20 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
610
views
Comment: Comment: Identifying binding sequences of a specific protein to its target
20 months ago by Assa Yeroslaviz ★ 1.8k
2
votes
3
replies
610
views
Identifying binding sequences of a specific protein to its target
transcription-factor-binding-site gene-regulation transcription-factor
20 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
693
views
Comment: Comment: Ca you help me understand the Nanopore fastqc results?
23 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
2
replies
693
views
Ca you help me understand the Nanopore fastqc results?
pycoQC long-read-seq nanopore fastqc
23 months ago by Assa Yeroslaviz ★ 1.8k
8
votes
7
replies
2.7k
views
Help me understand the Nanopore fastqc results
long-read-seq nanopore fastqc
updated 24 months ago by 100k • written 24 months ago by ★ 1.8k
0
votes
1
reply
2.7k
views
Comment: Comment: Help me understand the Nanopore fastqc results
24 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
2.7k
views
Comment: Comment: Help me understand the Nanopore fastqc results
24 months ago by Assa Yeroslaviz ★ 1.8k
15
votes
11
replies
8.8k
views
6 follow
filter out fasta File by pattern
pattern fasta awk sed regexp
updated 23 months ago by 21k • written 9.2 years ago by ★ 1.8k
0
votes
0
replies
346
views
pQTL analysis
plink GWAS pQTL linkage-disequilibrium
2.1 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
413
views
Understanding DEXSeq results
dexseq normalization counts
2.2 years ago by Assa Yeroslaviz ★ 1.8k
3
votes
1
reply
499
views
Basic understanding of Hi-C and interacion (contact-) maps
TADs interactions contact-maps AB-compartments HiC
updated 2.2 years ago by 82k • written 2.2 years ago by ★ 1.8k
1
vote
1
reply
765
views
Hoe do you do differential Splicing using edgeR command diffSpliceDGE?
differential-splicing edger diffSpliceDGE
updated 2.3 years ago by ▴ 120 • written 2.3 years ago by ★ 1.8k
1
vote
1
reply
1.5k
views
Comment: Comment: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
2.4 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
5.1k
views
Comment: Comment: How do I compare reads between two bam file?
2.5 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
5.1k
views
Comment: Comment: How do I compare reads between two bam file?
2.5 years ago by Assa Yeroslaviz ★ 1.8k
5
votes
5
replies
5.1k
views
How do I compare reads between two bam file?
samtools reads bam compare
updated 2.5 years ago by 161k • written 2.5 years ago by ★ 1.8k
0
votes
0
replies
11k
views
Comment: Comment: How Find Genes On Specific Positions
2.5 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
2.2k
views
Comment: Comment: DESeq2 model matrix not full rank
2.8 years ago by Assa Yeroslaviz ★ 1.8k
1
vote
0
replies
1.6k
views
Comment: Comment: DESeq2 comparison two cell types and two genotypes
3.0 years ago by Assa Yeroslaviz ★ 1.8k
2
votes
1
reply
1.7k
views
Comment: Comment: Failing to run tblastn
3.0 years ago by Assa Yeroslaviz ★ 1.8k
4
votes
4
replies
1.7k
views
Answer: Answer: Failing to run tblastn
3.0 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
1.7k
views
Comment: Comment: Failing to run tblastn
3.0 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
1.7k
views
Comment: Comment: Failing to run tblastn
3.0 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
1.7k
views
Comment: Comment: Failing to run tblastn
3.0 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
1.6k
views
Comment: Comment: DESeq2 comparison two cell types and two genotypes
3.0 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
46k
views
Comment: Comment: Bam File: Change Chromosome Notation
3.0 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
474
views
comparing distinct peaks from riboseq profiling results
ribosomal-profiling ribo-seq peaks
3.0 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
46k
views
Comment: Comment: Bam File: Change Chromosome Notation
3.0 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
842
views
adjust size of png images in a rasterGrob object
rasterGrob PNG Rmarkdown layout
3.1 years ago by Assa Yeroslaviz ★ 1.8k
2
votes
1
reply
764
views
Mapping after WGS show a parabel form
WGS mapping SNP CNV
updated 3.0 years ago by ▴ 10 • written 3.1 years ago by ★ 1.8k
0
votes
0
replies
809
views
Comment: C: Modifying an annotation files after transgene insertion
3.1 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
2
replies
809
views
Modifying an annotation files after transgene insertion
transgene insertion gtf annotation
3.1 years ago by Assa Yeroslaviz ★ 1.8k
1
vote
2
replies
1.3k
views
how many reads are necessary for Ribo-Seq analysis
riboseq ribosome profiling ribo-seq
updated 3.3 years ago by • 0 • written 5.0 years ago by ★ 1.8k
560 results • Page 2 of 12
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