Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
2
replies
1.9k
views
scRNAseq: thoughts on merging datasets generating from different version of 10x cellranger?
scRNAseq Harmony 10x Seurat
updated 2.3 years ago by 7.2k • written 2.3 years ago by ▴ 130
0
votes
0
replies
1.5k
views
Integration with Harmony using seurat object + SCTransform
SCTransform seurat scRNAseq
2.9 years ago by simplitia ▴ 130
0
votes
0
replies
1.7k
views
Comment: Comment: How to tell if GEO SRA is paired or single?
3.0 years ago by simplitia ▴ 130
3
votes
4
replies
1.7k
views
How to tell if GEO SRA is paired or single?
rnaseq geo
3.0 years ago by simplitia ▴ 130
0
votes
0
replies
1.7k
views
Comment: Comment: How to tell if GEO SRA is paired or single?
3.0 years ago by simplitia ▴ 130
1
vote
0
replies
1.8k
views
Comment: Comment: How many IGH genes are there? Confused about nomenclature.
3.1 years ago by simplitia ▴ 130
1
vote
1
reply
1.8k
views
Comment: Comment: How many IGH genes are there? Confused about nomenclature.
3.1 years ago by simplitia ▴ 130
1
vote
1
reply
1.8k
views
Comment: Comment: How many IGH genes are there? Confused about nomenclature.
3.1 years ago by simplitia ▴ 130
8
votes
6
replies
1.8k
views
How many IGH genes are there? Confused about nomenclature.
rnaseq genecode
3.1 years ago by simplitia ▴ 130
0
votes
1
reply
3.5k
views
Comment: Comment: What are the units for the sctransform SCT scale.data slots?
3.3 years ago by simplitia ▴ 130
0
votes
1
reply
3.5k
views
Comment: Comment: What are the units for the sctransform SCT scale.data slots?
3.3 years ago by simplitia ▴ 130
0
votes
5
replies
3.5k
views
What are the units for the sctransform SCT scale.data slots?
10x Seurat scRNAseq
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 130
0
votes
0
replies
31k
views
Comment: Comment: Over Representation Vs Enrichment Analysis
3.4 years ago by simplitia ▴ 130
1
vote
0
replies
1.5k
views
Comment: Comment: For downstream analysis from cellranger 10x scRNAseq eg. Seurat package, do you
3.4 years ago by simplitia ▴ 130
0
votes
0
replies
7.9k
views
Comment: Comment: What is the best practice of scRNA workflow for multiple patients and samples us
3.4 years ago by simplitia ▴ 130
1
vote
2
replies
1.5k
views
For downstream analysis from cellranger 10x scRNAseq eg. Seurat package, do you recommend using raw or filtered matrix?
10x Seurat scRNAseq
3.4 years ago by simplitia ▴ 130
4
votes
3
replies
1.5k
views
Create a bed file bins from fasta?
bed fasta
updated 3.4 years ago by 13k • written 3.4 years ago by ▴ 130
0
votes
4
replies
1.2k
views
Biologically what does it mean when an exon has higher expression?
expression rnaseq gene
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 130
0
votes
1
reply
1.2k
views
Comment: Comment: Biologically what does it mean when an exon has higher expression?
3.5 years ago by simplitia ▴ 130
0
votes
0
replies
674
views
Can RNAseq expression be correlated with differential methylated regions?
rnaseq methylation
3.9 years ago by simplitia ▴ 130
1
vote
1
reply
866
views
What are the minimum packages required to compile samtools for Debian OS?
samtools
updated 3.9 years ago by ★ 30k • written 3.9 years ago by ▴ 130
0
votes
0
replies
2.5k
views
Comment: Comment: Is there a way to safely remove all underscore from gene id for hg19 from geneco
3.9 years ago by simplitia ▴ 130
0
votes
1
reply
2.5k
views
Comment: Comment: Is there a way to safely remove all underscore from gene id for hg19 from geneco
3.9 years ago by simplitia ▴ 130
0
votes
1
reply
2.5k
views
Comment: Comment: Is there a way to safely remove all underscore from gene id for hg19 from geneco
3.9 years ago by simplitia ▴ 130
0
votes
1
reply
2.5k
views
Comment: Comment: Is there a way to safely remove all underscore from gene id for hg19 from geneco
3.9 years ago by simplitia ▴ 130
0
votes
8
replies
2.5k
views
Is there a way to safely remove all underscore from gene id for hg19 from genecode
rnaseq genecode
3.9 years ago by simplitia ▴ 130
0
votes
0
replies
776
views
Is there a Grange object for swiss-prot domain? What I want is to detect what domains are overlapping with genomic coordinates.
R
3.9 years ago by simplitia ▴ 130
0
votes
1
reply
1.0k
views
Anyone know what the window size ( bin size) for dmrcate is?
EPIC 450K methylation
updated 3.9 years ago by ★ 2.1k • written 3.9 years ago by ▴ 130
1
vote
0
replies
16k
views
Comment: Comment: Automatic Outlier Detection for RNA-seq data
4.1 years ago by simplitia ▴ 130
0
votes
1
reply
16k
views
Comment: Comment: Automatic Outlier Detection for RNA-seq data
4.1 years ago by simplitia ▴ 130
1
vote
0
replies
1.8k
views
Comment: Comment: guilt by association
4.3 years ago by simplitia ▴ 130
1
vote
0
replies
5.1k
views
Comment: Comment: Inserting Variant allele frequency to VCF file
4.3 years ago by simplitia ▴ 130
0
votes
0
replies
937
views
Strelka2 stomatic calls, where is the GT tag ?
strelka annovar variant
4.3 years ago by simplitia ▴ 130
0
votes
1
reply
1.2k
views
converting genomic version for annovar database?
annovar variant
updated 4.3 years ago by ▴ 580 • written 4.3 years ago by ▴ 130
0
votes
0
replies
2.6k
views
Comment: Comment: Is there a way to extract alignment score from STAR aligner bam files?
4.4 years ago by simplitia ▴ 130
7
votes
5
replies
2.6k
views
Is there a way to extract alignment score from STAR aligner bam files?
rnaseq
4.4 years ago by simplitia ▴ 130
0
votes
0
replies
3.3k
views
Answer: Answer: install R package
4.4 years ago by simplitia ▴ 130
0
votes
0
replies
42k
views
Comment: Comment: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
4.5 years ago by simplitia ▴ 130
0
votes
1
reply
1.9k
views
Comment: Comment: Extracting reads from fastq files with BBMAP?
4.5 years ago by simplitia ▴ 130
0
votes
3
replies
1.9k
views
Extracting reads from fastq files with BBMAP?
bbmap fastq
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 130
0
votes
1
reply
42k
views
Comment: Comment: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
4.5 years ago by simplitia ▴ 130
0
votes
1
reply
42k
views
Comment: Comment: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
4.5 years ago by simplitia ▴ 130
1
vote
1
reply
1.0k
views
Convert COSMIC VCF coordinates to that of ensembl format?
sequencing SNP alignment next-gen
5.0 years ago by simplitia ▴ 130
0
votes
0
replies
935
views
Where can I get the GTex equivalent to rnaseqv2 Level3 RSEM_genes?
RNA-Seq tcga rsem
5.3 years ago by simplitia ▴ 130
0
votes
0
replies
31k
views
Comment: C: How To Do Normalization Of Two Chip-Seq Data?
5.4 years ago by simplitia ▴ 130
0
votes
5
replies
3.1k
views
Calculating and confirming shRNA knockdown gene from RNA-Seq?
RNA-Seq
updated 5.5 years ago by ▴ 940 • written 8.1 years ago by ▴ 130
1
vote
1
reply
5.6k
views
Comment: C: How to round the "expected counts" to integers?
5.5 years ago by simplitia ▴ 130
1
vote
3
replies
2.3k
views
How reliable are the ensembl transcript isoforms?
RNA-Seq ensembl isoform
updated 5.6 years ago by ▴ 330 • written 5.6 years ago by ▴ 130
2
votes
1
reply
2.1k
views
GRanges: remove ranges that falls in between a larger range?
grange RNA-Seq r
updated 5.7 years ago by ▴ 40 • written 5.7 years ago by ▴ 130
0
votes
1
reply
11k
views
Comment: C: How to color nodes in Cytoscape according to expression of genes? How should the
5.8 years ago by simplitia ▴ 130
75 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6