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Showing :
questions
0
votes
2
replies
355
views
Need some help to develop some python code to analyze kmer data
Python
R
3 months ago by
schlogl
▴ 160
5
votes
2
replies
882
views
Counting distance between kmer instances in a sequence
kmers
python
inter-distance
R
9 months ago by
schlogl
▴ 160
0
votes
0
replies
377
views
Using jellyfish in a slide window analysis
samtools
jellyfish
slidewindow
10 months ago by
schlogl
▴ 160
2
votes
3
replies
630
views
Using TRF in multiple files
tandem
TRF
repeats
11 months ago by
schlogl
▴ 160
3
votes
3
replies
1.7k
views
Getting a curl: (22) The requested URL returned error: 500 ERROR
ncbi
updated 14 months ago by
Ram
43k • written 15 months ago by
schlogl
▴ 160
2
votes
4
replies
977
views
Alien-hunter outputs
alien-hunter
15 months ago by
schlogl
▴ 160
2
votes
2
replies
550
views
Frequency of a trinucleotide normalized by synonymous codons
synonymous
codons
16 months ago by
schlogl
▴ 160
1
vote
0
replies
379
views
Statistics for large k-mers with low counts
genomes
k-mers
statistics
20 months ago by
schlogl
▴ 160
1
vote
3
replies
962
views
Looking for a example of using bedtools nuc in many fasta files
bedtools
21 months ago by
schlogl
▴ 160
3
votes
3
replies
1.4k
views
Splitting Gbff files
Gbff
updated 21 months ago by
Istvan Albert
100k • written 21 months ago by
schlogl
▴ 160
11
votes
5
replies
1.2k
views
'Can someone give me a direction on how to draw a figure like this one of dinucleotide frequency distribution pattern of genomes'?
plots
updated 2.4 years ago by
Dunois
★ 2.5k • written 2.4 years ago by
schlogl
▴ 160
0
votes
0
replies
1.0k
views
Have a question about run jellyfish in many directories with different number of zipped fasta files
bash
2.9 years ago by
schlogl
▴ 160
2
votes
6
replies
1.3k
views
Comparing genomes against randomized genomes
sequence
genomes
3.0 years ago by
schlogl
▴ 160
4
votes
2
replies
669
views
R or Python packages to work with SNPs
snp
updated 3.3 years ago by
aays
▴ 180 • written 3.3 years ago by
schlogl
▴ 160
6
votes
5
replies
885
views
Programmatically retrieving taxon classification
sequence
updated 3.3 years ago by
hugo.avila
▴ 490 • written 3.3 years ago by
schlogl
▴ 160
9
votes
16
replies
1.5k
views
I am trying to select some reference genome region of a bam file, but got an error
SAMTOOLS
updated 3.8 years ago by
lieven.sterck
15k • written 3.8 years ago by
schlogl
▴ 160
0
votes
1
reply
1.3k
views
I update R to version 4 and Rstudio crashes when I try to open a project
R
Rstudio
3.8 years ago by
schlogl
▴ 160
3
votes
5
replies
3.3k
views
metabat installation problem with conda
software error
updated 4.1 years ago by
omoyne
▴ 10 • written 4.2 years ago by
schlogl
▴ 160
7
votes
10
replies
870
views
New insights from old data?
genome
rna-seq
sequence
4.2 years ago by
schlogl
▴ 160
14
votes
22
replies
4.1k
views
Trying to use CD-HIT with a fasta file with 5 mers but not getting any output.
gene
clustering
CD-HIT
4.3 years ago by
schlogl
▴ 160
9
votes
19
replies
2.4k
views
There are any way to use a script for feed emboss with fasta sequence?
sequence
4.3 years ago by
schlogl
▴ 160
0
votes
0
replies
547
views
Is it save to use Bio.SeqUtils ProtoParam from Biopython?
sequence
Biopython
4.3 years ago by
schlogl
▴ 160
2
votes
4
replies
910
views
Quick question about expected codon frequencies
sequence
gene
updated 3 months ago by
LauferVA
4.2k • written 4.3 years ago by
schlogl
▴ 160
2
votes
2
replies
976
views
There are any way to conduct a motif search with pfam or CDD-NCBI with a big fasta file?
sequence
updated 4.4 years ago by
Mensur Dlakic
★ 27k • written 4.4 years ago by
schlogl
▴ 160
4
votes
20
replies
1.9k
views
How can I count aminoacid residues from a HUGE compressed fasta file?
sequence
4.4 years ago by
schlogl
▴ 160
6
votes
6
replies
5.1k
views
There are any python alternative to bioconductor?
python
4.4 years ago by
schlogl
▴ 160
1
vote
2
replies
973
views
Annotations with biomart for ballgown
rna-seq
R
4.4 years ago by
schlogl
▴ 160
6
votes
7
replies
1.5k
views
Stringtie not find the merged gtf reference
rna-seq
4.4 years ago by
schlogl
▴ 160
3
votes
1
reply
1.0k
views
Trying to build a transcript data base using makeTranscriptDbFromBiomart but got a error.
RNA-Seq
R
software error
updated 4.4 years ago by
Ram
43k • written 4.4 years ago by
schlogl
▴ 160
3
votes
4
replies
964
views
Arabidopsis indexed genome
next-gen
4.5 years ago by
schlogl
▴ 160
0
votes
7
replies
2.3k
views
problem installing prokka
software error
4.5 years ago by
schlogl
▴ 160
7
votes
7
replies
1.1k
views
Get some errors in a biopython code for split a multifasta genomic file
genome
biopython
4.6 years ago by
schlogl
▴ 160
7
votes
10
replies
4.2k
views
I would to like to know if there any python module to calculate a Hamming distance from multiple sequences aligment
alignment
4.6 years ago by
schlogl
▴ 160
5
votes
8
replies
1.4k
views
Trying to parse the SwissProt keywlist.txt with biopython
biopython
5.0 years ago by
schlogl
▴ 160
5
votes
2
replies
11k
views
Turning Seq objects into strings
sequence
5.2 years ago by
schlogl
▴ 160
0
votes
3
replies
2.5k
views
I am trying to install pygraphviz with pip...but get a error msg
software error
5.9 years ago by
schlogl
▴ 160
0
votes
2
replies
2.2k
views
Need tips about using the dbNSFP database in my PC
SNP
Annotation
updated 8.1 years ago by
Biostar
20 • written 8.1 years ago by
schlogl
▴ 160
37 results • Page
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