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1
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272
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What exactly is Biopython's alignment.score variable?
Biopython
8 months ago by Tom ▴ 50
1
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1
reply
642
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Is there a way to calculate percent identity and percent similarity with Bio.Align?
biopython bio.align
updated 8 months ago by 22k • written 8 months ago by ▴ 50
1
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3
replies
1.2k
views
Genotypic and clinical phenotypic feature selection methods for machine learning (in python)?
python machine-learning
updated 2.9 years ago by ★ 29k • written 2.9 years ago by ▴ 50
0
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0
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654
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Beagle: Index -l out of bounds for length 2
beagle genotyping
3.1 years ago by Tom ▴ 50
2
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5
replies
1.7k
views
Download all peptide sequences from NCBI in fasta format?
biopython
updated 5.2 years ago by 20 • written 5.4 years ago by ▴ 50
0
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1
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14k
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Comment: C: A:orthomcl with local mysql server on linux server, complete install
updated 5.3 years ago by 45k • written 8.9 years ago by ▴ 50
0
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1
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1.7k
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Comment: C: Download all peptide sequences from NCBI in fasta format?
5.4 years ago by Tom ▴ 50
0
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1
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1.7k
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Comment: C: Download all peptide sequences from NCBI in fasta format?
5.4 years ago by Tom ▴ 50
2
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1
reply
1.6k
views
How to run PSSPred on multple sequences
psspred peptide sequence
updated 7.0 years ago by 166k • written 7.0 years ago by ▴ 50
0
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0
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3.1k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.9 years ago by Tom ▴ 50
0
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1
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3.1k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.9 years ago by Tom ▴ 50
0
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1
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3.1k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.9 years ago by Tom ▴ 50
0
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1
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3.1k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.9 years ago by Tom ▴ 50
0
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1
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3.1k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.9 years ago by Tom ▴ 50
0
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1
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3.1k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.9 years ago by Tom ▴ 50
0
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1
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3.1k
views
Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.9 years ago by Tom ▴ 50
0
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2
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3.1k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
7.9 years ago by Tom ▴ 50
7
votes
17
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3.1k
views
Extract Bibliographic Reference from GEO dataset using EFetch?
geo efetch ncbi
updated 7.9 years ago by 5.8k • written 7.9 years ago by ▴ 50
0
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1
reply
2.5k
views
Comment: C: Combining gene expression data into a principal components analysis - how to dea
8.1 years ago by Tom ▴ 50
0
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1
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2.5k
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Comment: C: Combining gene expression data into a principal components analysis - how to dea
8.1 years ago by Tom ▴ 50
0
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1
reply
2.5k
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Comment: C: Combining gene expression data into a principal components analysis - how to dea
8.1 years ago by Tom ▴ 50
0
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2
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2.5k
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Comment: C: Combining gene expression data into a principal components analysis - how to dea
8.1 years ago by Tom ▴ 50
1
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8
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2.5k
views
Combining gene expression data into a principal components analysis - how to deal with missing data?
pca missing data gene expression r
8.1 years ago by Tom ▴ 50
0
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1
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4.4k
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Comment: C: Differential expression using microarray data and limma, where am I going wrong?
8.1 years ago by Tom ▴ 50
4
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5
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4.4k
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Differential expression using microarray data and limma, where am I going wrong?
limma differential expression microarray
8.1 years ago by Tom ▴ 50
0
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0
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3.0k
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Comment: C: NCBI: Parsing data nicely?
8.2 years ago by Tom ▴ 50
0
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0
replies
1.7k
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Is it possible to use geometadb to extract sample age from a set of samples in GEO?
geo geometadb R
8.2 years ago by Tom ▴ 50
4
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4
replies
3.0k
views
NCBI: Parsing data nicely?
parsing data table ncbi geo
updated 8.2 years ago by 11k • written 8.2 years ago by ▴ 50
0
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1
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3.0k
views
Comment: C: NCBI: Parsing data nicely?
8.2 years ago by Tom ▴ 50
0
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0
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5.3k
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Comment: C: How to identify one-to-one orthologs in inparanoid in 20 mammalian species
8.2 years ago by Tom ▴ 50
4
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8
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5.3k
views
How to identify one-to-one orthologs in inparanoid in 20 mammalian species
inparanoid one-to-one orthologs
updated 8.2 years ago by ▴ 40 • written 8.9 years ago by ▴ 50
0
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0
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38k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
8.2 years ago by Tom ▴ 50
0
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0
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5.6k
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Comment: C: Rattus norvegicus Rnor5.0 GTF annotation in GENCODE format ?
8.2 years ago by Tom ▴ 50
0
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0
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14k
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Comment: C: Convert read counts to RPKM or TPM values: Numbers don't look right?
8.2 years ago by Tom ▴ 50
0
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1
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38k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
8.2 years ago by Tom ▴ 50
0
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1
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38k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
8.3 years ago by Tom ▴ 50
0
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1
reply
38k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
8.3 years ago by Tom ▴ 50
0
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1
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6.6k
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Comment: C: couting rpkm by edgr package
8.3 years ago by Tom ▴ 50
6
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9
replies
14k
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Convert read counts to RPKM or TPM values: Numbers don't look right?
gene expression tpm rpkm geo
updated 8.3 years ago by ★ 1.4k • written 8.3 years ago by ▴ 50
0
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1
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14k
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Comment: C: Convert read counts to RPKM or TPM values: Numbers don't look right?
8.3 years ago by Tom ▴ 50
1
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1
reply
14k
views
Answer: A: Convert read counts to RPKM or TPM values: Numbers don't look right?
8.3 years ago by Tom ▴ 50
0
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0
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14k
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Comment: C: Convert read counts to RPKM or TPM values: Numbers don't look right?
8.3 years ago by Tom ▴ 50
0
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1
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4.3k
views
How to correctly calculate Storey-Tibshriani FDR Q Values using R Package "QValue"?
r fdr python q value p value
8.3 years ago by Tom ▴ 50
2
votes
2
replies
1.5k
views
Randomising gene expression data
randomisation gene expression python
updated 8.4 years ago by 27k • written 8.4 years ago by ▴ 50
0
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0
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4.7k
views
Comment: C: How to tell if a gene is over- or under-expressed from the output of F test (dif
8.4 years ago by Tom ▴ 50
0
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1
reply
4.7k
views
Comment: C: How to tell if a gene is over- or under-expressed from the output of F test (dif
8.4 years ago by Tom ▴ 50
0
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0
replies
2.4k
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Comment: C: Obtaining all age related expression data from GEO
8.5 years ago by Tom ▴ 50
0
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0
replies
2.4k
views
Comment: C: Obtaining all age related expression data from GEO
8.5 years ago by Tom ▴ 50
1
vote
5
replies
2.4k
views
Obtaining all age related expression data from GEO
geo
updated 8.5 years ago by ★ 4.0k • written 8.5 years ago by ▴ 50
1
vote
18
replies
3.2k
views
Why big gaps when I use Entrez Eutils to download protein coding sequences.
entrez eutils
8.7 years ago by Tom ▴ 50
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