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1
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0
replies
513
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What exactly is Biopython's alignment.score variable?
Biopython
14 months ago by Tom ▴ 50
1
vote
1
reply
1.3k
views
Is there a way to calculate percent identity and percent similarity with Bio.Align?
biopython bio.align
updated 15 months ago by 22k • written 15 months ago by ▴ 50
1
vote
3
replies
1.5k
views
Genotypic and clinical phenotypic feature selection methods for machine learning (in python)?
python machine-learning
updated 3.5 years ago by ★ 30k • written 3.5 years ago by ▴ 50
0
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0
replies
784
views
Beagle: Index -l out of bounds for length 2
beagle genotyping
3.6 years ago by Tom ▴ 50
2
votes
5
replies
2.1k
views
Download all peptide sequences from NCBI in fasta format?
biopython
updated 5.7 years ago by 20 • written 5.9 years ago by ▴ 50
0
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1
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15k
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Comment: C: A:orthomcl with local mysql server on linux server, complete install
updated 5.9 years ago by 45k • written 9.4 years ago by ▴ 50
0
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1
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2.1k
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Comment: C: Download all peptide sequences from NCBI in fasta format?
5.9 years ago by Tom ▴ 50
0
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1
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2.1k
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Comment: C: Download all peptide sequences from NCBI in fasta format?
5.9 years ago by Tom ▴ 50
2
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1
reply
1.8k
views
How to run PSSPred on multple sequences
psspred peptide sequence
updated 7.6 years ago by 166k • written 7.6 years ago by ▴ 50
0
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0
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3.8k
views
Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
8.5 years ago by Tom ▴ 50
0
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1
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3.8k
views
Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
8.5 years ago by Tom ▴ 50
0
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1
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3.8k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
8.5 years ago by Tom ▴ 50
0
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1
reply
3.8k
views
Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
8.5 years ago by Tom ▴ 50
0
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1
reply
3.8k
views
Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
8.5 years ago by Tom ▴ 50
0
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1
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3.8k
views
Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
8.5 years ago by Tom ▴ 50
0
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1
reply
3.8k
views
Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
8.5 years ago by Tom ▴ 50
0
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2
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3.8k
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Comment: C: Extract Bibliographic Reference from GEO dataset using EFetch?
8.5 years ago by Tom ▴ 50
7
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17
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3.8k
views
Extract Bibliographic Reference from GEO dataset using EFetch?
geo efetch ncbi
updated 8.5 years ago by 5.8k • written 8.5 years ago by ▴ 50
0
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1
reply
2.8k
views
Comment: C: Combining gene expression data into a principal components analysis - how to dea
8.6 years ago by Tom ▴ 50
0
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1
reply
2.8k
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Comment: C: Combining gene expression data into a principal components analysis - how to dea
8.6 years ago by Tom ▴ 50
0
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1
reply
2.8k
views
Comment: C: Combining gene expression data into a principal components analysis - how to dea
8.6 years ago by Tom ▴ 50
0
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2
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2.8k
views
Comment: C: Combining gene expression data into a principal components analysis - how to dea
8.6 years ago by Tom ▴ 50
1
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8
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2.8k
views
Combining gene expression data into a principal components analysis - how to deal with missing data?
pca missing data gene expression r
8.6 years ago by Tom ▴ 50
0
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1
reply
4.8k
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Comment: C: Differential expression using microarray data and limma, where am I going wrong?
8.6 years ago by Tom ▴ 50
4
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5
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4.8k
views
Differential expression using microarray data and limma, where am I going wrong?
limma differential expression microarray
8.6 years ago by Tom ▴ 50
0
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0
replies
3.3k
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Comment: C: NCBI: Parsing data nicely?
8.8 years ago by Tom ▴ 50
0
votes
0
replies
1.8k
views
Is it possible to use geometadb to extract sample age from a set of samples in GEO?
geo geometadb R
8.8 years ago by Tom ▴ 50
4
votes
4
replies
3.3k
views
NCBI: Parsing data nicely?
parsing data table ncbi geo
updated 8.8 years ago by 11k • written 8.8 years ago by ▴ 50
0
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1
reply
3.3k
views
Comment: C: NCBI: Parsing data nicely?
8.8 years ago by Tom ▴ 50
0
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0
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5.7k
views
Comment: C: How to identify one-to-one orthologs in inparanoid in 20 mammalian species
8.8 years ago by Tom ▴ 50
4
votes
8
replies
5.7k
views
How to identify one-to-one orthologs in inparanoid in 20 mammalian species
inparanoid one-to-one orthologs
updated 8.8 years ago by ▴ 40 • written 9.4 years ago by ▴ 50
0
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0
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42k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
8.8 years ago by Tom ▴ 50
0
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0
replies
5.9k
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Comment: C: Rattus norvegicus Rnor5.0 GTF annotation in GENCODE format ?
8.8 years ago by Tom ▴ 50
0
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0
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14k
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Comment: C: Convert read counts to RPKM or TPM values: Numbers don't look right?
8.8 years ago by Tom ▴ 50
0
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1
reply
42k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
8.8 years ago by Tom ▴ 50
0
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1
reply
42k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
8.8 years ago by Tom ▴ 50
0
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1
reply
42k
views
Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
8.8 years ago by Tom ▴ 50
0
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1
reply
7.0k
views
Comment: C: couting rpkm by edgr package
8.8 years ago by Tom ▴ 50
6
votes
9
replies
14k
views
Convert read counts to RPKM or TPM values: Numbers don't look right?
gene expression tpm rpkm geo
updated 8.8 years ago by ★ 1.4k • written 8.8 years ago by ▴ 50
0
votes
1
reply
14k
views
Comment: C: Convert read counts to RPKM or TPM values: Numbers don't look right?
8.8 years ago by Tom ▴ 50
1
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1
reply
14k
views
Answer: A: Convert read counts to RPKM or TPM values: Numbers don't look right?
8.8 years ago by Tom ▴ 50
0
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0
replies
14k
views
Comment: C: Convert read counts to RPKM or TPM values: Numbers don't look right?
8.8 years ago by Tom ▴ 50
0
votes
1
reply
4.7k
views
How to correctly calculate Storey-Tibshriani FDR Q Values using R Package "QValue"?
r fdr python q value p value
8.8 years ago by Tom ▴ 50
2
votes
2
replies
1.8k
views
Randomising gene expression data
randomisation gene expression python
updated 8.9 years ago by 27k • written 8.9 years ago by ▴ 50
0
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0
replies
5.5k
views
Comment: C: How to tell if a gene is over- or under-expressed from the output of F test (dif
9.0 years ago by Tom ▴ 50
0
votes
1
reply
5.5k
views
Comment: C: How to tell if a gene is over- or under-expressed from the output of F test (dif
9.0 years ago by Tom ▴ 50
0
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0
replies
2.7k
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Comment: C: Obtaining all age related expression data from GEO
9.0 years ago by Tom ▴ 50
0
votes
0
replies
2.7k
views
Comment: C: Obtaining all age related expression data from GEO
9.0 years ago by Tom ▴ 50
1
vote
5
replies
2.7k
views
Obtaining all age related expression data from GEO
geo
updated 9.0 years ago by ★ 4.0k • written 9.0 years ago by ▴ 50
1
vote
18
replies
3.8k
views
Why big gaps when I use Entrez Eutils to download protein coding sequences.
entrez eutils
9.3 years ago by Tom ▴ 50
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