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Comment: C: The most popular Alternative to David?
7.3 years ago by bxia ▴ 180
0
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1
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7.1k
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Comment: C: The most popular Alternative to David?
7.3 years ago by bxia ▴ 180
0
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2
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7.1k
views
Comment: C: The most popular Alternative to David?
7.3 years ago by bxia ▴ 180
0
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0
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1.8k
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Comment: C: Tophat2 very high percentage of multiple alignments
7.3 years ago by bxia ▴ 180
0
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1
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1.8k
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Comment: C: Tophat2 very high percentage of multiple alignments
7.3 years ago by bxia ▴ 180
1
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5
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1.8k
views
Tophat2 very high percentage of multiple alignments
RNA-Seq
7.3 years ago by bxia ▴ 180
0
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0
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4.1k
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Comment: C: fastq dump error: ERROR:106: Magic cookie '#%Module' missing
7.4 years ago by bxia ▴ 180
0
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2
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4.1k
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fastq dump error: ERROR:106: Magic cookie '#%Module' missing
RNA-Seq
7.4 years ago by bxia ▴ 180
7
votes
4
replies
4.8k
views
Why chip-seq is strand specific?
ChIP-Seq
updated 7.5 years ago by ▴ 280 • written 7.5 years ago by ▴ 180
2
votes
7
replies
17k
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how to get values from a columns from atomic vector without get the names of rows?
R
updated 7.5 years ago by ★ 2.0k • written 7.5 years ago by ▴ 180
0
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1
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17k
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Comment: C: how to get values from a columns from atomic vector without get the names of row
updated 7.5 years ago by 47k • written 7.5 years ago by ▴ 180
0
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0
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17k
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Comment: C: how to get values from a columns from atomic vector without get the names of row
7.5 years ago by bxia ▴ 180
2
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8
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3.2k
views
different BED Format for peak calling
ChIP-Seq
written 7.7 years ago by ▴ 180
0
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1
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3.2k
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Comment: C: different BED Format for peak calling
7.7 years ago by bxia ▴ 180
0
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1
reply
3.2k
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Comment: C: different BED Format for peak calling
7.7 years ago by bxia ▴ 180
0
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1
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8.6k
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Comment: C: From TCGA to GDC (Genomic data commons)
7.8 years ago by bxia ▴ 180
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2
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8.6k
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Comment: C: From TCGA to GDC (Genomic data commons)
7.8 years ago by bxia ▴ 180
0
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2
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1.5k
views
Clinical Data Analysis, Should compared with Normal tissue?
RNA-Seq
7.8 years ago by bxia ▴ 180
0
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0
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1.5k
views
Answer: A: Clinical Data Analysis, Should compared with Normal tissue?
7.8 years ago by bxia ▴ 180
7
votes
7
replies
2.0k
views
Main difference between format of Ensembl and USCS annotation
RNA-Seq Ensembl UCSC
updated 7.9 years ago by 23k • written 7.9 years ago by ▴ 180
0
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2
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2.0k
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Comment: A: Main difference between format of Ensembl and USCS annotation
7.9 years ago by bxia ▴ 180
3
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2
replies
4.5k
views
what is the '.' , '+' means in GTF file
RNA-Seq
updated 7.9 years ago by 8.6k • written 7.9 years ago by ▴ 180
6
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1
reply
2.7k
views
HTSEQ count is the raw count, not RPKM or FPKM, right?
RNA-Seq
updated 7.9 years ago by 47k • written 7.9 years ago by ▴ 180
0
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0
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10k
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Comment: C: how do I know the breast cancer subtype based on TCGA clinical data
7.9 years ago by bxia ▴ 180
0
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1
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10k
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Comment: C: how do I know the breast cancer subtype based on TCGA clinical data
7.9 years ago by bxia ▴ 180
0
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1
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3.3k
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Comment: C: GENECODE V24 vs V22 vs V19
7.9 years ago by bxia ▴ 180
3
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6
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3.3k
views
GENECODE V24 vs V22 vs V19
RNA-Seq gencode
updated 7.9 years ago by 7.5k • written 7.9 years ago by ▴ 180
0
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1
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3.3k
views
Comment: C: GENECODE V24 vs V22 vs V19
7.9 years ago by bxia ▴ 180
0
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1
reply
1.6k
views
Comment: C: high aligned_not_unique number for HTSeq
7.9 years ago by bxia ▴ 180
7
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7
replies
3.5k
views
which annotation I should for RNA-seq? Ensembl, UCSC or refseq?
RNA-Seq Ensembl RefSeq
updated 7.9 years ago by ★ 5.2k • written 8.0 years ago by ▴ 180
1
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7
replies
1.6k
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high aligned_not_unique number for HTSeq
RNA-Seq
7.9 years ago by bxia ▴ 180
0
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0
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2.9k
views
Comment: C: HTSeq result, most genes have 0 count?
8.0 years ago by bxia ▴ 180
0
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0
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2.9k
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Comment: C: HTSeq result, most genes have 0 count?
8.0 years ago by bxia ▴ 180
0
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1
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2.9k
views
Comment: C: HTSeq result, most genes have 0 count?
8.0 years ago by bxia ▴ 180
0
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1
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2.9k
views
Comment: A: HTSeq result, most genes have 0 count?
8.0 years ago by bxia ▴ 180
1
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8
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2.9k
views
HTSeq result, most genes have 0 count?
RNA-Seq
8.0 years ago by bxia ▴ 180
3
votes
2
replies
2.0k
views
Do I need to remove unmapped reads before running MACS2?
ChIP-Seq
updated 8.0 years ago by ★ 3.9k • written 8.0 years ago by ▴ 180
8
votes
2
replies
2.3k
views
Why samtools sort input file is 4.3 Gb but output become 3.5Gb....
ChIP-Seq
updated 8.0 years ago by 13k • written 8.0 years ago by ▴ 180
0
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1
reply
1.5k
views
Comment: C: where I can download mapped result of SRA files
8.0 years ago by bxia ▴ 180
1
vote
4
replies
1.5k
views
where I can download mapped result of SRA files
ChIP-Seq
updated 8.0 years ago by ★ 9.4k • written 8.0 years ago by ▴ 180
0
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1
reply
7.9k
views
Comment: C: bedGrapthToBigWig conversion, xxx is not found in chromosome files
8.0 years ago by bxia ▴ 180
0
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1
reply
7.9k
views
Comment: C: bedGrapthToBigWig conversion, xxx is not found in chromosome files
8.0 years ago by bxia ▴ 180
0
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1
reply
7.9k
views
Comment: C: bedGrapthToBigWig conversion, xxx is not found in chromosome files
8.0 years ago by bxia ▴ 180
0
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1
reply
7.9k
views
Comment: C: bedGrapthToBigWig conversion, xxx is not found in chromosome files
8.0 years ago by bxia ▴ 180
2
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3
replies
2.3k
views
For Chip-seq, which control data I should choose for each biological replicate samples in MACS2
Chip-seq
updated 8.0 years ago by ★ 3.4k • written 8.0 years ago by ▴ 180
0
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1
reply
1.8k
views
Comment: C: Does bowtie2 still require fastqsanger format?
8.0 years ago by bxia ▴ 180
0
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1
reply
1.8k
views
Comment: C: Does bowtie2 still require fastqsanger format?
8.0 years ago by bxia ▴ 180
2
votes
6
replies
1.8k
views
Does bowtie2 still require fastqsanger format?
ChIP-Seq
updated 8.0 years ago by ★ 1.8k • written 8.0 years ago by ▴ 180
2
votes
6
replies
2.0k
views
Primary_assembly and GRCh38.84.gtf.gz are the files for mapping?
RNA-Seq ChIP-Seq
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by ▴ 180
5
votes
2
replies
3.6k
views
SRA to fastq conversion, 2Gb to 11Gb
RNA-Seq ChIP-Seq
updated 8.0 years ago by ★ 1.8k • written 8.0 years ago by ▴ 180
107 results • Page 2 of 3
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