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Software to calculate expected sequence identity between two species, given speciation time
identity speciation sequence alignment
updated 3.0 years ago by 45k • written 10.0 years ago by 3.2k
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4.6k
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Answer: Answer: How to interpret the difference among these three options in strandedness from H
updated 3.0 years ago by 45k • written 10.0 years ago by 3.2k
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Comment: Comment: Degenerate primer/adaptor removal tool for Galaxy?
updated 3.0 years ago by 45k • written 10.1 years ago by 3.2k
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1
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2.2k
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Comment: Comment: some contradiction in fastqc
updated 3.0 years ago by 45k • written 10.1 years ago by 3.2k
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2.2k
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Answer: Answer: some contradiction in fastqc
updated 3.0 years ago by 45k • written 10.1 years ago by 3.2k
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37k
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Comment: C: Help a graduate student going into Bioinformatics looking for a new personal lap
10.1 years ago by Biomonika (Noolean) 3.2k
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1
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2.5k
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Comment: Comment: Assessing diversity of random oligonucleotides
updated 2.9 years ago by 45k • written 10.1 years ago by 3.2k
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1
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3.8k
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Comment: C: Filtering BLAST results.
10.1 years ago by Biomonika (Noolean) 3.2k
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1
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2.8k
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How to generate bam files for Quiver
quiver PacBio
updated 2.9 years ago by 45k • written 10.1 years ago by 3.2k
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1
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11k
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Comment: Comment: Truncated SAM file - odd characters
updated 2.9 years ago by 45k • written 10.1 years ago by 3.2k
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1
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11k
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Answer: Answer: Truncated SAM file - odd characters
updated 2.9 years ago by 45k • written 10.1 years ago by 3.2k
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1.8k
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Comment: C: How to prepare RNA-seq data for Piano?
10.1 years ago by Biomonika (Noolean) 3.2k
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1
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17k
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Comment: Comment: TRIMMOMATRIC Nextera trimming
updated 2.9 years ago by 45k • written 10.1 years ago by 3.2k
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1
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1.8k
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whole genome alignments accompanying papers - where to deposit them?
alignments database
updated 2.8 years ago by 45k • written 10.3 years ago by 3.2k
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2.6k
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Comment: Comment: what is the cases when the insert size between mate pairs is zero?
updated 2.8 years ago by 45k • written 10.2 years ago by 3.2k
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2
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2.6k
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Comment: Comment: what is the cases when the insert size between mate pairs is zero?
updated 2.8 years ago by 45k • written 10.2 years ago by 3.2k
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3.3k
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Comment: Comment: reviewing a paper with software/code I cannot run
updated 2.8 years ago by 45k • written 10.2 years ago by 3.2k
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9
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3.3k
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8 follow
Forum: reviewing a paper with software/code I cannot run
submission code-review open-access
updated 2.8 years ago by 45k • written 10.2 years ago by 3.2k
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23
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11k
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13 follow
How To Assemble Chloroplast Genome?
genome assembly
updated 2.6 years ago by 45k • written 13.4 years ago by 3.2k
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8.4k
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Comment: Comment: Short Sequence BLAST Search with Gaps
updated 2.7 years ago by 45k • written 10.3 years ago by 3.2k
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1
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8.4k
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Comment: C: Short Sequence BLAST Search with Gaps
10.3 years ago by Biomonika (Noolean) 3.2k
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1
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1.9k
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sequencing through heterochromatin (e.g. with PacBio)
heterochromatin PacBio sequencing
updated 10.3 years ago by 35k • written 10.3 years ago by 3.2k
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2
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15k
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Comment: Comment: Flower plot in R ?
updated 2.7 years ago by 45k • written 10.3 years ago by 3.2k
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0
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1.8k
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Answer: Answer: when the local alignment tends to work as global alignment?
updated 2.7 years ago by 45k • written 10.3 years ago by 3.2k
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0
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3.3k
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Comment: Comment: Using RNA-seq expression data in a classification model
updated 2.7 years ago by 45k • written 10.3 years ago by 3.2k
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2
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6.0k
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Comment: C: Trimmomatics parameters for WGS data quality improvement
10.3 years ago by Biomonika (Noolean) 3.2k
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1
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2.9k
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Answer: Answer: visualization of gene-miRNA interaction
updated 2.7 years ago by 45k • written 10.3 years ago by 3.2k
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2.8k
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Comment: C: Single gene circos plot possible?
10.3 years ago by Biomonika (Noolean) 3.2k
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0
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2.9k
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Comment: Comment: cn.mops calling copy number 1 state as CNV using the haplocn.mops function in an
updated 3.7 years ago by 45k • written 10.3 years ago by 3.2k
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4
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5.6k
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Mapping mate-pairs reads with bowtie2
aligner mate-pair bowtie2
updated 2.7 years ago by 45k • written 10.3 years ago by 3.2k
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0
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37k
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Comment: Comment: Help a graduate student going into Bioinformatics looking for a new personal lap
updated 3.0 years ago by 45k • written 10.4 years ago by 3.2k
4
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1
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2.3k
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span of GFF file
GFF span
updated 4.5 years ago by 45k • written 10.4 years ago by 3.2k
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0
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3.4k
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Comment: Comment: Command to estimate how long local blastx take to finish the job?
updated 3.2 years ago by 45k • written 10.4 years ago by 3.2k
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1
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4.8k
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Answer: Answer: How to find out the reverse complement of DNA from each FASTA formated sequence
updated 3.2 years ago by 45k • written 10.5 years ago by 3.2k
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1
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14k
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Comment: C: biomart gene coordinates do not correspond to genome browser
10.5 years ago by Biomonika (Noolean) 3.2k
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0
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3.4k
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Comment: C: How to compare assembly from Trinity and Velvet/Oases
10.5 years ago by Biomonika (Noolean) 3.2k
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2
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2.5k
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per bp depth intersected with gff file
bam bedtools depth coverage
updated 10.5 years ago by 105k • written 10.5 years ago by 3.2k
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0
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5.6k
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Comment: Comment: WGBS data analysis in Galaxy?
updated 3.3 years ago by 45k • written 10.5 years ago by 3.2k
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0
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1.8k
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Comment: Comment: shall we do PCA analysis in target region sequencing project
updated 3.3 years ago by 45k • written 10.5 years ago by 3.2k
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0
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3.0k
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Answer: A: flip mate-pair libraries from rf to fr
10.5 years ago by Biomonika (Noolean) 3.2k
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6
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5.0k
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How To Identify Genes In Transposable Elements
genes orf
updated 10.5 years ago by 20 • written 12.2 years ago by 3.2k
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0
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13k
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Answer: Answer: Nice way to view primers amplicon on hg19
updated 3.3 years ago by 45k • written 10.5 years ago by 3.2k
2
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1
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3.3k
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Answer: Answer: Ideal coverage required for PacBio error correction using HGAP
updated 3.3 years ago by 45k • written 10.5 years ago by 3.2k
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0
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2.1k
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Comment: C: How to generate pair-wise alignments for all the orthologous gene pairs at once?
10.5 years ago by Biomonika (Noolean) 3.2k
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4.0k
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Comment: C: How visualize better way the output data from Bayescan?
10.5 years ago by Biomonika (Noolean) 3.2k
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0
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5.1k
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Comment: C: lowercase fasta coordinates to GFF
10.5 years ago by Biomonika (Noolean) 3.2k
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2
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5.1k
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Comment: C: lowercase fasta coordinates to GFF
10.5 years ago by Biomonika (Noolean) 3.2k
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0
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2.9k
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Comment: C: Exome sequencing and association
10.5 years ago by Biomonika (Noolean) 3.2k
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1
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5.2k
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Comment: C: DE analysis with [DESeq2] without replicates
10.5 years ago by Biomonika (Noolean) 3.2k
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0
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2.4k
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Download unspliced RefSeq genes
RefSeq GRCh38
updated 3.4 years ago by 45k • written 10.5 years ago by 3.2k
449 results • Page 3 of 9
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