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Showing :
questions
0
votes
3
replies
1.2k
views
Mitochondrial sequence data analysis
Sequencing
RNA
2.9 years ago by
bandanaschapagain
▴ 30
0
votes
0
replies
561
views
Samtools vcf file filtering
samtools
RNAseq
sequencing
3.0 years ago by
bandanaschapagain
▴ 30
3
votes
4
replies
1.1k
views
Alignment Viewer
sequencing
alignment
updated 3.1 years ago by
GenoMax
141k • written 3.1 years ago by
bandanaschapagain
▴ 30
3
votes
14
replies
2.4k
views
Samtools depth to get the read depth
sequencing
RNA-Seq
3.2 years ago by
bandanaschapagain
▴ 30
0
votes
1
reply
946
views
bcftools parameter to define mitochondrial heteroplasmy and haploid condition.
SNP
RNA-Seq
sequencing
snp
assembly
3.2 years ago by
bandanaschapagain
▴ 30
4
votes
7
replies
1.2k
views
bcftools variant calling
genome
Assembly
SNP
alignment
updated 3.2 years ago by
Dave Carlson
★ 1.7k • written 3.2 years ago by
bandanaschapagain
▴ 30
0
votes
6
replies
3.1k
views
Picard MarkDuplicates from bam files
Picard
next-gen
sequence
3.4 years ago by
bandanaschapagain
▴ 30
0
votes
2
replies
561
views
Growth Rate Estimation
R
growth-curve
updated 3.7 years ago by
Ram
43k • written 3.7 years ago by
bandanaschapagain
▴ 30
0
votes
4
replies
5.8k
views
Heatmap Plot in R using plot_ly
R
updated 5.8 years ago by
GenoMax
141k • written 5.8 years ago by
bandanaschapagain
▴ 30
4
votes
9
replies
6.8k
views
To make the reference index for bowtie alignment.
Assembly
rna-seq
updated 6.5 years ago by
Arindam Ghosh
▴ 510 • written 7.1 years ago by
bandanaschapagain
▴ 30
0
votes
0
replies
905
views
To get the looptinformation from the secondary structure of Viral RNA
RNA-Seq
next-gen
rna-seq
gene
6.5 years ago by
bandanaschapagain
▴ 30
1
vote
8
replies
1.6k
views
RNA strucuture prediction
rna-seq
RNA-Seq
6.6 years ago by
bandanaschapagain
▴ 30
0
votes
0
replies
1.5k
views
Lofreq Error For SNP calling
RNA-Seq
SNP
6.8 years ago by
bandanaschapagain
▴ 30
0
votes
1
reply
1.2k
views
Understanding Lowfreq Output
snp
next-gen
sequence
6.8 years ago by
bandanaschapagain
▴ 30
1
vote
9
replies
1.8k
views
To find Single Nucleotide polymorphism
RNA-Seq
alignment
next-gen
snp
6.9 years ago by
bandanaschapagain
▴ 30
0
votes
1
reply
1.3k
views
For Viral Recombination Identification
RNA-Seq
alignment
updated 7.0 years ago by
Biostar
20 • written 7.2 years ago by
bandanaschapagain
▴ 30
1
vote
9
replies
4.0k
views
Bowtie Sam output analysis
Assembly
RNA-Seq
sequencing
updated 7.1 years ago by
Biostar
20 • written 7.2 years ago by
bandanaschapagain
▴ 30
0
votes
1
reply
796
views
To match the fastq header and print the files
next-gen
updated 7.1 years ago by
Pierre Lindenbaum
161k • written 7.1 years ago by
bandanaschapagain
▴ 30
2
votes
7
replies
3.1k
views
To download the sequences by using NCBI entrenz direct
RNA-Seq
genome
sequencing
ncbi
entrez
updated 7.2 years ago by
Andrzej Zielezinski
11k • written 7.4 years ago by
bandanaschapagain
▴ 30
1
vote
3
replies
1.3k
views
To find the correct paramter
genome
next-gen
alignment
rna-seq
blast
updated 7.3 years ago by
Sinji
★ 3.2k • written 7.3 years ago by
bandanaschapagain
▴ 30
1
vote
8
replies
3.8k
views
How to get percentage of reads mapped to each Reference Genome
RNA-Seq
sequencing
alignment
7.4 years ago by
bandanaschapagain
▴ 30
0
votes
1
reply
1.2k
views
To understand the purpose of different tools
RNA-Seq
rna-seq
gene
sequencing
updated 7.4 years ago by
Ram
43k • written 7.4 years ago by
bandanaschapagain
▴ 30
3
votes
16
replies
1.9k
views
For RNA seq data analysis
RNA-Seq
Assembly
genome
next-gen
sequencing
updated 7.4 years ago by
Ming Tommy Tang
★ 3.9k • written 7.4 years ago by
bandanaschapagain
▴ 30
0
votes
5
replies
1.4k
views
Using Cufflinks with SRA Reads
RNA-Seq
Assembly
sequence
next-gen
updated 7.5 years ago by
Ron
★ 1.2k • written 7.5 years ago by
bandanaschapagain
▴ 30
1
vote
4
replies
2.2k
views
For Basespace data download
RNA-Seq
updated 7.5 years ago by
Renesh
★ 2.2k • written 7.5 years ago by
bandanaschapagain
▴ 30
0
votes
1
reply
1.2k
views
For cufflinks error of using gff files
RNA-Seq
rna-seq
Assembly
gene
updated 7.5 years ago by
Jeffin Rockey
★ 1.3k • written 7.5 years ago by
bandanaschapagain
▴ 30
0
votes
2
replies
2.2k
views
for blastp output
RNA-Seq
alignment
updated 7.5 years ago by
WouterDeCoster
47k • written 7.5 years ago by
bandanaschapagain
▴ 30
5
votes
18
replies
3.0k
views
Downloading SRA Reads
RNA-Seq
next-gen
7.6 years ago by
bandanaschapagain
▴ 30
1
vote
2
replies
1.9k
views
To get fasta header
RNA-Seq
perl
bio perl
updated 7.7 years ago by
Biostar
20 • written 7.8 years ago by
bandanaschapagain
▴ 30
5
votes
3
replies
8.0k
views
Detail about fna file
RNA-Seq
updated 7.8 years ago by
GenoMax
141k • written 7.8 years ago by
bandanaschapagain
▴ 30
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