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2
votes
4
replies
2.0k
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generating transcript to gene mapping with unhelpful GFF3 file
salmon RNAseq transcriptome gff3
updated 8 months ago by ▴ 10 • written 4.0 years ago by ▴ 50
0
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1
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3.0k
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Comment: Comment: Prinseq lite data preprocessing
2.5 years ago by thomas.welch ▴ 50
0
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1
reply
3.0k
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Comment: Comment: Prinseq lite data preprocessing
2.5 years ago by thomas.welch ▴ 50
0
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0
replies
1.1k
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Comment: Comment: Reconcile reference transcriptome with reference genome from different labs with
2.6 years ago by thomas.welch ▴ 50
0
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1
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1.1k
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Comment: Comment: Reconcile reference transcriptome with reference genome from different labs with
2.6 years ago by thomas.welch ▴ 50
1
vote
4
replies
1.1k
views
Reconcile reference transcriptome with reference genome from different labs with different naming schemes
proteomics transcriptomics transcdecoder annotation
updated 2.6 years ago by 151k • written 2.6 years ago by ▴ 50
2
votes
1
reply
1.5k
views
GVCF vs VCF INFO tags, relevance for filtering RNAseq SNPs
vcf snps gvcf gatk
updated 3.1 years ago by 166k • written 3.1 years ago by ▴ 50
0
votes
0
replies
548
views
RNAseq SNP discovery: deciding upon filters and dealing with allele expression bias
SNP RNAseq transciptomics filtering GATK
3.2 years ago by thomas.welch ▴ 50
0
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1
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2.0k
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Comment: Comment: generating transcript to gene mapping with unhelpful GFF3 file
4.0 years ago by thomas.welch ▴ 50
1
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0
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1.1k
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Comment: Comment: reporting differentially expressed genes in a global RNA-seq study
4.1 years ago by thomas.welch ▴ 50
2
votes
2
replies
1.1k
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Forum: reporting differentially expressed genes in a global RNA-seq study
DESeq2 RNA-seq expression heatmaps transcriptomics
4.1 years ago by thomas.welch ▴ 50
0
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0
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7.1k
views
Comment: C: Is there a way to get the name or IDs of genes with the goseq table?
4.9 years ago by thomas.welch ▴ 50
0
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2
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7.1k
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Comment: C: Is there a way to get the name or IDs of genes with the goseq table?
4.9 years ago by thomas.welch ▴ 50
6
votes
6
replies
3.9k
views
Retrieving GO mappings for GOseq analysis with non-native organism
gene ontology GOseq topGO GAF gff
updated 12 months ago by • 0 • written 5.0 years ago by ▴ 50
0
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1
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3.9k
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Answer: A: Retrieving GO mappings for GOseq analysis with non-native organism
5.0 years ago by thomas.welch ▴ 50
1
vote
1
reply
5.3k
views
Comment: C: Hisat2 aligner problem
5.9 years ago by thomas.welch ▴ 50
5
votes
7
replies
6.8k
views
merging a number of overlapping sanger sequences
merge sequence alignment
updated 6.7 years ago by ▴ 20 • written 7.7 years ago by ▴ 50
0
votes
0
replies
2.0k
views
IGV indels not included in consensus sequence
IGV indels consensus sequence alignment ngs
updated 7.3 years ago by 20 • written 7.4 years ago by ▴ 50
1
vote
2
replies
1.6k
views
large deletion detection in a haploid microbial eukaryote
structural variant haploid microbial sequencing
updated 8.3 years ago by 20k • written 8.3 years ago by ▴ 50
0
votes
1
reply
1.8k
views
multiple sequence alignment for validation of large indels
multiple-sequence-alignment cnvnator indels
updated 2.1 years ago by 45k • written 8.3 years ago by ▴ 50
0
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0
replies
2.6k
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Comment: C: blastall vs bl2seq, and blastall fasta output
8.6 years ago by thomas.welch ▴ 50
0
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1
reply
2.6k
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Comment: C: blastall vs bl2seq, and blastall fasta output
8.6 years ago by thomas.welch ▴ 50
0
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1
reply
2.6k
views
Comment: C: blastall vs bl2seq, and blastall fasta output
8.6 years ago by thomas.welch ▴ 50
3
votes
7
replies
2.6k
views
blastall vs bl2seq, and blastall fasta output
blast blastall bl2seq blast+ fasta
8.6 years ago by thomas.welch ▴ 50
24 results • Page 1 of 1
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