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0
votes
1
reply
2.3k
views
Comment:
Comment: Prinseq lite data preprocessing
17 months ago by
thomas.welch
▴ 50
0
votes
1
reply
2.3k
views
Comment:
Comment: Prinseq lite data preprocessing
17 months ago by
thomas.welch
▴ 50
0
votes
0
replies
742
views
Comment:
Comment: Reconcile reference transcriptome with reference genome from different labs with
18 months ago by
thomas.welch
▴ 50
0
votes
1
reply
742
views
Comment:
Comment: Reconcile reference transcriptome with reference genome from different labs with
18 months ago by
thomas.welch
▴ 50
1
vote
4
replies
742
views
Reconcile reference transcriptome with reference genome from different labs with different naming schemes
proteomics
transcriptomics
transcdecoder
annotation
updated 18 months ago by
GenoMax
141k • written 18 months ago by
thomas.welch
▴ 50
2
votes
1
reply
818
views
GVCF vs VCF INFO tags, relevance for filtering RNAseq SNPs
vcf
snps
gvcf
gatk
updated 2.0 years ago by
Pierre Lindenbaum
161k • written 2.0 years ago by
thomas.welch
▴ 50
0
votes
0
replies
380
views
RNAseq SNP discovery: deciding upon filters and dealing with allele expression bias
SNP
RNAseq
transciptomics
filtering
GATK
2.1 years ago by
thomas.welch
▴ 50
0
votes
1
reply
1.3k
views
Comment:
Comment: generating transcript to gene mapping with unhelpful GFF3 file
2.8 years ago by
thomas.welch
▴ 50
2
votes
3
replies
1.3k
views
generating transcript to gene mapping with unhelpful GFF3 file
salmon
RNAseq
transcriptome
gff3
updated 2.8 years ago by
Juke34
8.5k • written 2.8 years ago by
thomas.welch
▴ 50
1
vote
0
replies
816
views
Comment:
Comment: reporting differentially expressed genes in a global RNA-seq study
3.0 years ago by
thomas.welch
▴ 50
2
votes
2
replies
816
views
Forum:
reporting differentially expressed genes in a global RNA-seq study
DESeq2
RNA-seq
expression
heatmaps
transcriptomics
3.0 years ago by
thomas.welch
▴ 50
0
votes
0
replies
5.9k
views
Comment:
C: Is there a way to get the name or IDs of genes with the goseq table?
3.8 years ago by
thomas.welch
▴ 50
0
votes
2
replies
5.9k
views
Comment:
C: Is there a way to get the name or IDs of genes with the goseq table?
3.8 years ago by
thomas.welch
▴ 50
6
votes
5
replies
2.8k
views
Retrieving GO mappings for GOseq analysis with non-native organism
gene ontology
GOseq
topGO
GAF
gff
3.9 years ago by
thomas.welch
▴ 50
0
votes
0
replies
2.8k
views
Answer:
A: Retrieving GO mappings for GOseq analysis with non-native organism
3.9 years ago by
thomas.welch
▴ 50
1
vote
1
reply
4.0k
views
Comment:
C: Hisat2 aligner problem
4.8 years ago by
thomas.welch
▴ 50
5
votes
7
replies
5.7k
views
merging a number of overlapping sanger sequences
merge
sequence
alignment
updated 5.6 years ago by
ferroao
▴ 20 • written 6.6 years ago by
thomas.welch
▴ 50
0
votes
0
replies
1.8k
views
IGV indels not included in consensus sequence
IGV
indels
consensus sequence
alignment
ngs
updated 6.2 years ago by
Biostar
20 • written 6.2 years ago by
thomas.welch
▴ 50
1
vote
2
replies
1.3k
views
large deletion detection in a haploid microbial eukaryote
structural variant
haploid
microbial
sequencing
updated 7.1 years ago by
Brian Bushnell
20k • written 7.1 years ago by
thomas.welch
▴ 50
0
votes
1
reply
1.6k
views
multiple sequence alignment for validation of large indels
multiple-sequence-alignment
cnvnator
indels
updated 11 months ago by
Ram
43k • written 7.2 years ago by
thomas.welch
▴ 50
0
votes
0
replies
2.2k
views
Comment:
C: blastall vs bl2seq, and blastall fasta output
7.5 years ago by
thomas.welch
▴ 50
0
votes
1
reply
2.2k
views
Comment:
C: blastall vs bl2seq, and blastall fasta output
7.5 years ago by
thomas.welch
▴ 50
0
votes
1
reply
2.2k
views
Comment:
C: blastall vs bl2seq, and blastall fasta output
7.5 years ago by
thomas.welch
▴ 50
3
votes
7
replies
2.2k
views
blastall vs bl2seq, and blastall fasta output
blast
blastall
bl2seq
blast+
fasta
7.5 years ago by
thomas.welch
▴ 50
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