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22
votes
8
replies
46k
views
8 follow
Merging/Concatenating Vcf Files
vcftools snp indel
updated 21 months ago by ▴ 330 • written 12.8 years ago by ▴ 840
1
vote
4
replies
3.7k
views
Mapping shorts reads using Bowtie
index bowtie mapping samtools
updated 2.5 years ago by 45k • written 9.9 years ago by ▴ 840
0
votes
0
replies
1.8k
views
Comment: C: Comparing v3 and v4 datasets with v3-v4 amplicon datasets
4.9 years ago by bioinfo ▴ 840
1
vote
3
replies
1.8k
views
Comparing v3 and v4 datasets with v3-v4 amplicon datasets
metabarcoding amplicon sequencing 16s rRNA
updated 4.9 years ago by 10k • written 4.9 years ago by ▴ 840
3
votes
4
replies
7.7k
views
How to align DNA reads against a database of protein references
alignment bowtie BWA
updated 2.5 years ago by 45k • written 9.9 years ago by ▴ 840
0
votes
0
replies
7.0k
views
Answer: A: Blastdbcmd Cant Find Protein Database
updated 5.4 years ago by 45k • written 12.1 years ago by ▴ 840
2
votes
15
replies
9.5k
views
8 follow
Insert Size For Illumina Gaiix Paired-End Library From Sam/Bam File
illumina next-gen sam bam
updated 17 months ago by ▴ 10 • written 12.8 years ago by ▴ 840
0
votes
1
reply
4.0k
views
Comment: C: Downloading protein sequences for a set of chromosomes from NCBI
updated 5.5 years ago by 45k • written 9.7 years ago by ▴ 840
0
votes
0
replies
2.8k
views
Comment: C: Designing primers by mapping short NGS reads to reference genes
updated 5.5 years ago by 45k • written 9.9 years ago by ▴ 840
1
vote
5
replies
7.0k
views
Blastdbcmd Cant Find Protein Database
blast
updated 5.5 years ago by 20 • written 12.1 years ago by ▴ 840
0
votes
1
reply
1.7k
views
Metagenomics vs metatranscriptomics
metagenomics metatranscriptomics assembly RNA-Seq
updated 5.7 years ago by ★ 29k • written 5.7 years ago by ▴ 840
0
votes
3
replies
1.2k
views
Assembling multipartite (e.g. tripartite - 3 segments) viruses
virus Assembly
5.8 years ago by bioinfo ▴ 840
0
votes
0
replies
1.2k
views
Comment: C: Assembling multipartite (e.g. tripartite) viruses
5.8 years ago by bioinfo ▴ 840
2
votes
3
replies
1.8k
views
Job: Senior bioinformatician, Auckland, New Zealand (3 yrs fixed-term)
virus software database sequencing
updated 24 months ago by 45k • written 5.8 years ago by ▴ 840
0
votes
1
reply
5.4k
views
Comment: C: Downloading all COI sequences from BOLD database
5.8 years ago by bioinfo ▴ 840
0
votes
2
replies
5.4k
views
Comment: C: Downloading all COI sequences from BOLD database
5.8 years ago by bioinfo ▴ 840
0
votes
5
replies
5.4k
views
Downloading all COI sequences from BOLD database
bold coi barcoding
5.8 years ago by bioinfo ▴ 840
0
votes
1
reply
1.8k
views
Comment: C: Senior bioinformatician, Auckland, New Zealand (3 yrs fixed-term)
5.8 years ago by bioinfo ▴ 840
5
votes
8
replies
5.3k
views
How To Extract Gene Names From An Unstructured Text File?
awk
updated 5.8 years ago by ▴ 60 • written 12.1 years ago by ▴ 840
5
votes
3
replies
2.7k
views
Required packages during Cygwin installation for bioinformatics work
cygwin wget
updated 23 months ago by 45k • written 6.1 years ago by ▴ 840
11
votes
13
replies
6.0k
views
6 follow
Forum: NGS Data storage solutions for small organisations or big labs
big-data HTS storage NGS metagenomics
updated 24 months ago by 45k • written 5.9 years ago by ▴ 840
0
votes
1
reply
177k
views
Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
6.8 years ago by bioinfo ▴ 840
1
vote
2
replies
1.8k
views
GC content in metagenomic data
metagenomics Assembly
6.8 years ago by bioinfo ▴ 840
7
votes
12
replies
18k
views
6 follow
Downloading Data From Mg-Rast
parsing
updated 2.9 years ago by 45k • written 11.2 years ago by ▴ 840
22
votes
9
replies
26k
views
9 follow
Building Snpeff Database
vcftools snp gatk
updated 20 months ago by 45k • written 12.8 years ago by ▴ 840
0
votes
0
replies
2.7k
views
Comment: C: Rainbow assembly- segmentation fault?
7.5 years ago by bioinfo ▴ 840
58
votes
15
replies
53k
views
11 follow
Filtering Vcf File
vcftools vcf snp indel
updated 3.3 years ago by 45k • written 12.8 years ago by ▴ 840
0
votes
0
replies
21k
views
Comment: C: Counting mapped reads from a SAM file
7.8 years ago by bioinfo ▴ 840
0
votes
0
replies
5.6k
views
Answer: A: Extracting Specific Reads From Vcf File
7.9 years ago by bioinfo ▴ 840
0
votes
2
replies
7.8k
views
Rarefaction curve at different sequencing depths
rarefaction qiime metagenomics 16S
updated 7.9 years ago by 102k • written 7.9 years ago by ▴ 840
13
votes
11
replies
16k
views
8 follow
Retrieving Fasta Sequence Using Uniprot Id
fasta
updated 3.4 years ago by 45k • written 12.0 years ago by ▴ 840
0
votes
0
replies
1.8k
views
Subsampling a taxa abundance matrix
subsampling taxa
updated 2.9 years ago by 45k • written 9.3 years ago by ▴ 840
0
votes
1
reply
3.4k
views
Handling high duplication levels in fastqc report of raw illumina data from metagenomics
fastqc metageomics illumina
updated 2.9 years ago by 45k • written 9.4 years ago by ▴ 840
4
votes
5
replies
11k
views
Why Vcftools Commands Not Working?
vcftools snp perl
updated 9.6 years ago by ▴ 10 • written 12.8 years ago by ▴ 840
0
votes
0
replies
2.6k
views
Is there any toxin-antitoxin system (gene/protein) database?
ncbi toxin database
updated 2.9 years ago by 45k • written 9.6 years ago by ▴ 840
0
votes
6
replies
4.0k
views
Downloading protein sequences for a set of chromosomes from NCBI
ncbi genbank efetch
updated 2.6 years ago by 45k • written 9.7 years ago by ▴ 840
0
votes
6
replies
4.6k
views
Getting nucleotide sequences using protein accession
gene ncbi uniprot sequence
updated 2.7 years ago by 45k • written 9.7 years ago by ▴ 840
0
votes
0
replies
4.6k
views
Comment: C: Getting nucleotide sequences using protein accession
9.7 years ago by bioinfo ▴ 840
0
votes
1
reply
4.6k
views
Comment: Comment: Getting nucleotide sequences using protein accession
updated 2.7 years ago by 45k • written 9.7 years ago by ▴ 840
0
votes
3
replies
2.7k
views
Fastest and memory efficient tool for 16S RNA counts
16s-rRNA metagenome
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 840
0
votes
0
replies
2.7k
views
Comment: Comment: Fastest and memory efficient tool for 16S RNA counts
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 840
0
votes
0
replies
2.1k
views
USEARCH and Vmatch producing different number of hits
vmatch usearch blast NGS
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 840
0
votes
0
replies
3.7k
views
Comment: Comment: Mapping shorts reads using Bowtie
updated 2.5 years ago by 45k • written 9.9 years ago by ▴ 840
0
votes
1
reply
3.7k
views
Comment: Comment: Mapping shorts reads using Bowtie
updated 2.5 years ago by 45k • written 9.9 years ago by ▴ 840
0
votes
1
reply
2.8k
views
Comment: Comment: Designing primers by mapping short NGS reads to reference genes
updated 2.5 years ago by 45k • written 9.9 years ago by ▴ 840
0
votes
4
replies
2.8k
views
Designing primers by mapping short NGS reads to reference genes
blast sam samtools gff alignment
updated 2.5 years ago by 45k • written 9.9 years ago by ▴ 840
0
votes
0
replies
1.7k
views
Assembling integron gene-cassettes from metagenomes
metagenomics Assembly integrons targeted-assembly
updated 9.9 years ago by 20 • written 10.0 years ago by ▴ 840
0
votes
0
replies
17k
views
Comment: Comment: Convert Illumina Reads To Sanger Score
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 840
1
vote
0
replies
6.1k
views
Comment: C: Filtering sanger_fastq, illumina_fastq files using Fastx-Toolkit
10.1 years ago by bioinfo ▴ 840
0
votes
2
replies
6.1k
views
Answer: Answer: Filtering sanger_fastq, illumina_fastq files using Fastx-Toolkit
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 840
153 results • Page 1 of 4
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