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Somatic variant call
Mutect2 Varscan variant-filtering SNP
updated 2.6 years ago by 45k • written 8.5 years ago by ▴ 30
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representation of chromosomal positions in the format of cytogenetic band.
chromosomal position variant representation.
updated 8.5 years ago by 166k • written 8.5 years ago by ▴ 30
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I need some sets of pathogenic variants related to any mendelian disorder.
variant prioritization
updated 8.5 years ago by 48k • written 8.5 years ago by ▴ 30
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converting wannovar generated csv annotation data to a vcf=4.1 file.
csv vcf wannovar variant prioritization
8.5 years ago by sktbanerjee1 ▴ 30
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Comment: A: Somatic variant call
8.5 years ago by sktbanerjee1 ▴ 30
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4.4k
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Comment: C: Somatic variant call
8.5 years ago by sktbanerjee1 ▴ 30
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Comment: C: Obtaining read group information from the Fastq file
8.6 years ago by sktbanerjee1 ▴ 30
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3
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Is it necessery to perform GATK-BQSR before performing variant calling using freebayes.
Freebayes BQSR GATK
updated 8.6 years ago by 16k • written 8.6 years ago by ▴ 30
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15k
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Comment: C: Obtaining read group information from the Fastq file
8.6 years ago by sktbanerjee1 ▴ 30
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1
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15k
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Comment: A: Obtaining read group information from the Fastq file
8.6 years ago by sktbanerjee1 ▴ 30
5
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8
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15k
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Obtaining read group information from the Fastq file
fastq readgroup
updated 4.5 years ago by 154k • written 8.6 years ago by ▴ 30
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