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0
votes
4
replies
699
views
how to perform phylogeny to know the evolution of strains
raxml fasta
11 months ago by Neel ▴ 20
0
votes
0
replies
548
views
In .local(object, test.stat, ...) : No enrichment can pe performed - there are no feasible GO terms!
topGO
12 months ago by Neel ▴ 20
1
vote
2
replies
1.7k
views
Warning: [tblastn] Examining 5 or more matches is recommended
sma3s
12 months ago by Neel ▴ 20
0
votes
0
replies
311
views
how to perform functional enrichment on pangenome data
topGO sma3s
12 months ago by Neel ▴ 20
2
votes
2
replies
678
views
i want to replace accession number with gene name?
fasta
12 months ago by Neel ▴ 20
0
votes
1
reply
740
views
ImportError: Bio.Alphabet has been removed from Biopython
Biopython
updated 13 months ago by ★ 2.0k • written 13 months ago by ▴ 20
0
votes
4
replies
644
views
Does it possible to know what are the adjacent genes up to 1000bp upstream and downstream of IS element
Transposons
13 months ago by Neel ▴ 20
0
votes
6
replies
1.1k
views
cblaster didn't create .dmnd out file???????
blast
14 months ago by Neel ▴ 20
0
votes
1
reply
442
views
ValueError: not enough values to unpack (expected 2, got 1)
clinker
updated 14 months ago by ▴ 120 • written 14 months ago by ▴ 20
0
votes
0
replies
388
views
is there anyway to make gbk file for desired genes only?
gbk NCBI
14 months ago by Neel ▴ 20
0
votes
3
replies
549
views
how to change >header in to new line??
fasta
updated 14 months ago by 43k • written 14 months ago by ▴ 20
0
votes
1
reply
703
views
**Error: unable to open file or unable to determine types for file**
bedtools
updated 15 months ago by 161k • written 15 months ago by ▴ 20
0
votes
2
replies
1.1k
views
Error: Please supply a reference FASTA/GBK/EMBL file with --reference
snippy Prokka
updated 15 months ago by 6.4k • written 15 months ago by ▴ 20
0
votes
0
replies
330
views
How to separate gene which are not annotated by prokka with their name for GO analysis
fasta GO GENE
15 months ago by Neel ▴ 20
0
votes
4
replies
913
views
how to perform gene ontology on genomic data?
GO
15 months ago by Neel ▴ 20
0
votes
0
replies
320
views
Does anyone know how to install GOFEAT on your local server?
GOFEAT
17 months ago by Neel ▴ 20
0
votes
2
replies
817
views
argv: Subscript out of range.
ksnp3
updated 18 months ago by ▴ 100 • written 18 months ago by ▴ 20
0
votes
1
reply
396
views
How can we use CARD database directly without using it RGI model of github
CARD
updated 19 months ago by 161k • written 19 months ago by ▴ 20
0
votes
7
replies
1.8k
views
Argument "1.7.8" isn't numeric in numeric lt (<) at /home/bvs/anaconda3/envs/prokka_env/bin/prokka line 259.
Prokka
updated 19 months ago by ★ 27k • written 19 months ago by ▴ 20
0
votes
0
replies
1.3k
views
ValueError: Image size of 124950x11600 pixels is too large. It must be less than 2^16 in each direction.
RGI
19 months ago by Neel ▴ 20
0
votes
2
replies
644
views
How to replace # with character in fasta file after header and space
fasta
20 months ago by Neel ▴ 20
0
votes
3
replies
656
views
how to discard same hypothetical protein in 300 strains protein file
annotation fasta
21 months ago by Neel ▴ 20
0
votes
5
replies
1.1k
views
how to annotate bacterial genome which are annotated in reference with different name
annotation
updated 21 months ago by ★ 1.8k • written 21 months ago by ▴ 20
1
vote
4
replies
945
views
How to replace underscore between digits and character or at second place (_) in protein seq header & discriptions
Blast
21 months ago by Neel ▴ 20
0
votes
5
replies
810
views
how to extract DNA seq from a file which contain both protein and DNA
fasta
updated 21 months ago by 142k • written 21 months ago by ▴ 20
0
votes
2
replies
611
views
How to extract ORF_ID(LR590472.1_162 ) from large number of txt file
fasta
21 months ago by Neel ▴ 20
0
votes
0
replies
295
views
AttributeError: module '__main__' has no attribute '/home/bvs/Neelam/resfinder/db_resfinder/'
Resfinder
updated 22 months ago by 142k • written 22 months ago by ▴ 20
0
votes
0
replies
799
views
ValueError: The number of observations cannot be determined on an empty distance matrix.
CARD
22 months ago by Neel ▴ 20
1
vote
1
reply
413
views
ImportError: No module named xgboos
Patric
updated 22 months ago by ★ 27k • written 22 months ago by ▴ 20
0
votes
0
replies
552
views
[Error] The following command failed: perl P_aeruginosa_PAO1/cct_projects/dna_vs_dna/cgview_xml_builder.pl
CCT
updated 23 months ago by 13k • written 23 months ago by ▴ 20
0
votes
0
replies
925
views
TypeError: webpack.NoErrorsPlugin is not a constructor
panX
23 months ago by Neel ▴ 20
1
vote
5
replies
1.6k
views
How to find shortest lenth or longest length from fasta file
fasta
23 months ago by Neel ▴ 20
0
votes
1
reply
515
views
project_settings_dna_vs_dna.conf' does not exist
CGView CCT
updated 23 months ago by ▴ 910 • written 23 months ago by ▴ 20
0
votes
1
reply
493
views
mkdir: cannot create directory ‘/home/neel@m95/Desktop/AMR/cgview_comparison_tool/cog_db’: Permission denied
CGView CCT
updated 23 months ago by 21k • written 23 months ago by ▴ 20
0
votes
2
replies
918
views
Error: unexpected input in "_" Execution halted Use of uninitialized value in require at (eval 1407) line 1.
roary
24 months ago by Neel ▴ 20
0
votes
0
replies
452
views
ERROR: This has possibly been a NUCmer run failure, please investigate ERROR: NoneType: None
pyani
updated 24 months ago by 15k • written 24 months ago by ▴ 20
0
votes
3
replies
908
views
ERROR_ non-ACGTN characters in genome
quast
updated 2.0 years ago by 4.6k • written 2.0 years ago by ▴ 20
2
votes
13
replies
1.4k
views
How to separate plasmid from whole complete genome
genebank ncbi
updated 2.0 years ago by 142k • written 2.0 years ago by ▴ 20
0
votes
12
replies
1.4k
views
Can't exec "cd": No such file or directory at ./PAst.pl line 43
PAst
updated 2.0 years ago by 15k • written 2.0 years ago by ▴ 20
0
votes
4
replies
822
views
Error with gzipped FASTA file in mash.
mash
2.0 years ago by Neel ▴ 20
0
votes
3
replies
2.2k
views
ValueError: zero-size array to reduction operation minimum which has no identity
pyani
updated 2.0 years ago by • 0 • written 2.3 years ago by ▴ 20
0
votes
0
replies
265
views
does anyone know ? how to use gclust on multiple genomes fasta files?
gclust
2.1 years ago by Neel ▴ 20
0
votes
0
replies
273
views
How to visualize gclust clustering output in graph?
gclust
updated 2.1 years ago by 82k • written 2.1 years ago by ▴ 20
1
vote
5
replies
860
views
Does anyone know? how to sort one16s rDNA from multiple 16s rDNA in one strains for phylogenetic tree construction?
16srDNA barrnap
2.1 years ago by Neel ▴ 20
1
vote
2
replies
1.2k
views
ERROR: The system limits on the number of files a process can open is too low.
orthofinder
2.1 years ago by Neel ▴ 20
1
vote
2
replies
851
views
KeyError: "['GIMC5015'] not in index"
roary
2.2 years ago by Neel ▴ 20
0
votes
4
replies
838
views
Use of uninitialized value $total in numeric gt (>) at ./get_homologues.pl line 1589.
get_homologues
updated 10 months ago by 43k • written 2.2 years ago by ▴ 20
0
votes
0
replies
372
views
Couldn't find a single MLST profile
MLST
2.3 years ago by Neel ▴ 20
1
vote
2
replies
998
views
FastANI Blank output/finished without producing output
FastANI
2.3 years ago by Neel ▴ 20
2
votes
5
replies
1.8k
views
ImportError: No module named Bio
roary
updated 2.3 years ago by 43k • written 2.3 years ago by ▴ 20
52 results • Page 1 of 2
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