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Error in ChIPQC(samples) : Unable to process. Each bam file must be associated with at most one peakset.
ChIP-Seq
updated 20 months ago by • 0 • written 3.3 years ago by ▴ 50
1
vote
1
reply
507
views
How to calculate all possible chromatin interactions in a given sample?
Hi-C ChIAPET
updated 2.2 years ago by ★ 1.9k • written 2.2 years ago by ▴ 50
0
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0
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1.8k
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Comment: Comment: How to get parameter estimation r and p for Negative Binomial distribution using
2.6 years ago by bioinfo89 ▴ 50
0
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5
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1.8k
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How to get parameter estimation r and p for Negative Binomial distribution using R?
R
updated 2.6 years ago by 82k • written 2.6 years ago by ▴ 50
0
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1
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1.8k
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Comment: Comment: How to get parameter estimation r and p for Negative Binomial distribution using
2.6 years ago by bioinfo89 ▴ 50
0
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0
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2.6k
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Comment: Comment: Which R function can be used for intersection of genomic coordinates from one fi
2.8 years ago by bioinfo89 ▴ 50
3
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4
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2.6k
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Which R function can be used for intersection of genomic coordinates from one file and check if the coordinates are within a specific range?
coordinates R Genomic
2.8 years ago by bioinfo89 ▴ 50
0
votes
1
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941
views
Express v_1.5.1 Error: Transcript IDs from MultiFASTA do not match with (SAM/BAM) file.
rna-seq read counts
updated 3.2 years ago by 5.8k • written 3.2 years ago by ▴ 50
0
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1
reply
814
views
Comment: C: ChIA-PET2 ERROR: The input file is neither a BAM file nor a SAM file.
3.3 years ago by bioinfo89 ▴ 50
0
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0
replies
814
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Comment: C: ChIA-PET2 ERROR: The input file is neither a BAM file nor a SAM file.
3.3 years ago by bioinfo89 ▴ 50
0
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4
replies
814
views
ChIA-PET2 ERROR: The input file is neither a BAM file nor a SAM file.
Chiapet
3.3 years ago by bioinfo89 ▴ 50
0
votes
0
replies
1.6k
views
Comment: C: Chia-pipe cannot find the module pigz
3.6 years ago by bioinfo89 ▴ 50
0
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1
reply
1.6k
views
Comment: C: Chia-pipe cannot find the module pigz
3.6 years ago by bioinfo89 ▴ 50
0
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0
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1.6k
views
Comment: C: Chia-pipe cannot find the module pigz
3.6 years ago by bioinfo89 ▴ 50
0
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1
reply
1.6k
views
Comment: C: Chia-pipe cannot find the module pigz
3.6 years ago by bioinfo89 ▴ 50
0
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1
reply
1.6k
views
Comment: C: Chia-pipe cannot find the module pigz
3.6 years ago by bioinfo89 ▴ 50
0
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2
replies
1.6k
views
Comment: C: Chia-pipe cannot find the module pigz
3.6 years ago by bioinfo89 ▴ 50
1
vote
13
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1.6k
views
Chia-pipe cannot find the module pigz
next-gen ChIP-Seq ChIA-PET
updated 3.6 years ago by 43k • written 3.6 years ago by ▴ 50
0
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0
replies
636
views
What information does ChIA-PET2 tool trim statistics terms provide exactly?
ChIP-Seq
updated 3.9 years ago by 5.8k • written 4.0 years ago by ▴ 50
2
votes
2
replies
876
views
ChIA-PET2: Error: Don't have enough confident interactions to learn the model.
ChIP-Seq
updated 4.0 years ago by 5.8k • written 4.1 years ago by ▴ 50
0
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1
reply
3.5k
views
Comment: C: bedtools complement error
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 50
0
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1
reply
3.0k
views
Comment: C: Where to get homopolymer annotation for human genome ?
4.9 years ago by bioinfo89 ▴ 50
7
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6
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4.6k
views
How to calculate average depth for each Amplicon in targeted amplicon sequencing?
next-gen bedtools
updated 5.0 years ago by ▴ 10 • written 6.0 years ago by ▴ 50
2
votes
1
reply
784
views
How to consider/get the g. positions for variants in introns?
SNP
updated 5.1 years ago by 16k • written 5.1 years ago by ▴ 50
7
votes
13
replies
12k
views
Merge vcf files with multiple samples into one vcf with all variants
SNP vcf
updated 5.1 years ago by 11k • written 5.4 years ago by ▴ 50
0
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0
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12k
views
Comment: C: Merge vcf files with multiple samples into one vcf with all variants
updated 5.4 years ago by 47k • written 5.4 years ago by ▴ 50
0
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1
reply
12k
views
Comment: C: Merge vcf files with multiple samples into one vcf with all variants
updated 5.4 years ago by 47k • written 5.4 years ago by ▴ 50
0
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0
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12k
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Comment: C: Merge vcf files with multiple samples into one vcf with all variants
5.4 years ago by bioinfo89 ▴ 50
0
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3
replies
12k
views
Comment: C: How to merge multiple VCF files (each has multiple samples genotype) from differ
5.4 years ago by bioinfo89 ▴ 50
0
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0
replies
1.8k
views
Comment: C: How to convert chrM variants from NC_001807.4 version coordinates to NC_012920.1
5.4 years ago by bioinfo89 ▴ 50
1
vote
2
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1.8k
views
How to convert chrM variants from NC_001807.4 version coordinates to NC_012920.1 coordinates?
SNP Assembly
5.4 years ago by bioinfo89 ▴ 50
0
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0
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3.6k
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Comment: C: VCF validation error:Ref allele mismatch?
5.4 years ago by bioinfo89 ▴ 50
0
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1
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3.6k
views
Comment: C: VCF validation error:Ref allele mismatch?
5.5 years ago by bioinfo89 ▴ 50
0
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1
reply
3.6k
views
Comment: C: VCF validation error:Ref allele mismatch?
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 50
0
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1
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3.6k
views
Comment: C: VCF validation error:Ref allele mismatch?
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 50
0
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0
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3.6k
views
Comment: C: VCF validation error:Ref allele mismatch?
updated 5.5 years ago by 16k • written 5.5 years ago by ▴ 50
0
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1
reply
3.6k
views
Comment: C: VCF validation error:Ref allele mismatch?
5.5 years ago by bioinfo89 ▴ 50
0
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1
reply
3.6k
views
Comment: C: VCF validation error:Ref allele mismatch?
5.5 years ago by bioinfo89 ▴ 50
2
votes
13
replies
3.6k
views
VCF validation error:Ref allele mismatch?
SNP assembly genome
updated 5.5 years ago by 16k • written 5.5 years ago by ▴ 50
0
votes
1
reply
3.5k
views
Comment: C: How to integrate GTEx data for variant annotation to understand the tissue speci
5.5 years ago by bioinfo89 ▴ 50
1
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1
reply
3.5k
views
Comment: C: How to integrate GTEx data for variant annotation to understand the tissue speci
5.6 years ago by bioinfo89 ▴ 50
1
vote
1
reply
4.4k
views
Comment: C: Retrieve genbank viral genomes
updated 5.7 years ago by 5.8k • written 5.7 years ago by ▴ 50
0
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0
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3.5k
views
Comment: C: How to integrate GTEx data for variant annotation to understand the tissue speci
5.7 years ago by bioinfo89 ▴ 50
3
votes
8
replies
3.5k
views
How to integrate GTEx data for variant annotation to understand the tissue specific expression?
SNP next-gen
updated 5.7 years ago by 7.5k • written 5.7 years ago by ▴ 50
0
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0
replies
2.4k
views
Comment: C: How to filter variant calls based on specific reference and alternate allele fre
5.8 years ago by bioinfo89 ▴ 50
0
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0
replies
2.4k
views
Comment: C: How to filter variant calls based on specific reference and alternate allele fre
5.9 years ago by bioinfo89 ▴ 50
0
votes
4
replies
2.4k
views
How to filter variant calls based on specific reference and alternate allele frequency ratio during variations calling?
SNP vcf
updated 5.9 years ago by 16k • written 5.9 years ago by ▴ 50
1
vote
2
replies
2.7k
views
Answer: A: How to extract unique paired end reads from a merged BAM file?
updated 5.9 years ago by 5.8k • written 6.0 years ago by ▴ 50
0
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1
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2.7k
views
Comment: C: How to extract unique paired end reads from a merged BAM file?
updated 5.9 years ago by 5.8k • written 6.0 years ago by ▴ 50
11
votes
16
replies
2.7k
views
How to extract unique paired end reads from a merged BAM file?
RNA-Seq
updated 5.9 years ago by 5.8k • written 6.0 years ago by ▴ 50
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