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10
votes
8
replies
7.2k
views
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
ucsc bigwig BedgraphToBigWig bamCoverage deeptools
updated 16 months ago by ▴ 80 • written 7.1 years ago by ▴ 440
78
votes
15
replies
59k
views
10 follow
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
risk minor major reference alleles
written 7.4 years ago by ▴ 440
2
votes
6
replies
4.3k
views
PRSice: how to obtain exact list of SNPs used for PRSice.best
PRS PRSice PLINK
updated 2.7 years ago by ★ 4.8k • written 5.0 years ago by ▴ 440
0
votes
0
replies
2.0k
views
IMPUTE2: change names of specific SNPs
impute2 SNPs names
updated 4.8 years ago by 20 • written 8.0 years ago by ▴ 440
0
votes
1
reply
1.7k
views
IMPUTE2: how to dynamically obtain chunks for each chromosome
IMPUTE2 chunks
updated 5.2 years ago by ▴ 30 • written 5.2 years ago by ▴ 440
1
vote
1
reply
2.7k
views
R: How to test for trend of risk scores
R trend test risk scores
updated 5.2 years ago by 20 • written 8.1 years ago by ▴ 440
0
votes
0
replies
925
views
How to do pathway analysis on kinome Drosophila dataset
pathway-analysis GO kinome statistical-power
updated 5.4 years ago by 20 • written 5.6 years ago by ▴ 440
3
votes
2
replies
2.4k
views
variableStep vs fixedStep for range formats
ucsc formats bigwig bedgraph range
updated 5.7 years ago by 20 • written 7.0 years ago by ▴ 440
0
votes
0
replies
1.0k
views
Resources recommendations for cloud computing (AWS) beginners
cloud aws hpc
updated 2.3 years ago by 45k • written 5.7 years ago by ▴ 440
0
votes
0
replies
788
views
Software design book/resource recommendation for bioinformaticians
python RNA-Seq software-design best-practise
5.9 years ago by m98 ▴ 440
6
votes
3
replies
13k
views
Installing MultiQC on Ubuntu
ngs fastqc multiqc
updated 6.0 years ago by ★ 1.5k • written 7.3 years ago by ▴ 440
5
votes
3
replies
3.2k
views
R: How to save Mart object (BiomaRt package)
R BiomaRt RNA-Seq
updated 6.3 years ago by ★ 2.1k • written 6.3 years ago by ▴ 440
0
votes
0
replies
2.4k
views
Comment: C: Is DAVID an over-representation (ORA) tool for pathway analysis
6.6 years ago by m98 ▴ 440
1
vote
2
replies
2.4k
views
Is DAVID an over-representation (ORA) tool for pathway analysis
DAVID pathway-analysis
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 440
3
votes
0
replies
11k
views
edgeR: how to make contrasts with makeContrasts
ngs edgeR makeContrasts glm dge
6.9 years ago by m98 ▴ 440
1
vote
2
replies
2.8k
views
Reformating bedGraph files in shell script
bedGraph bigWig ucsc chr awk
updated 6.9 years ago by 20 • written 7.1 years ago by ▴ 440
1
vote
0
replies
2.0k
views
UCSC hub: autoscale option for multiwig track
ucsc multiWig track autoscale
7.0 years ago by m98 ▴ 440
0
votes
0
replies
2.4k
views
Comment: C: variableStep vs fixedStep for range formats
7.0 years ago by m98 ▴ 440
0
votes
0
replies
2.8k
views
Comment: C: Reformating bedGraph files in shell script
7.1 years ago by m98 ▴ 440
0
votes
1
reply
4.3k
views
Comment: C: Output bedGraph from genomeCoverageBed is missing "chr"
7.1 years ago by m98 ▴ 440
0
votes
1
reply
4.3k
views
Comment: C: Output bedGraph from genomeCoverageBed is missing "chr"
7.1 years ago by m98 ▴ 440
0
votes
1
reply
4.3k
views
Comment: C: Output bedGraph from genomeCoverageBed is missing "chr"
7.1 years ago by m98 ▴ 440
5
votes
8
replies
4.3k
views
Output bedGraph from genomeCoverageBed is missing "chr"
RNA-Seq ucsc genomeCoverageBed bedGraph bigWig
updated 7.1 years ago by 45k • written 7.1 years ago by ▴ 440
0
votes
0
replies
14k
views
Comment: C: How to get raw Github URL for a large file
7.1 years ago by m98 ▴ 440
5
votes
3
replies
14k
views
How to get raw Github URL for a large file
ucsc url github
updated 7.1 years ago by ★ 19k • written 7.1 years ago by ▴ 440
25
votes
10
replies
5.1k
views
10 follow
Any suggestions for basic intro to submitting jobs to an HPC cluster?
ngs hpc
updated 2.4 years ago by 45k • written 7.1 years ago by ▴ 440
0
votes
0
replies
9.0k
views
Comment: C: Understanding subsampling with Samtools
7.1 years ago by m98 ▴ 440
4
votes
5
replies
9.0k
views
Understanding subsampling with Samtools
RNA-Seq subsampling samtools seed reads
updated 4.2 years ago by ▴ 880 • written 7.1 years ago by ▴ 440
8
votes
3
replies
3.5k
views
Normalising RNA-seq samples from bam files for UCSC Genome browser visualization
RNA-Seq ucsc bam bigwig
updated 7.1 years ago by 6.1k • written 7.1 years ago by ▴ 440
13
votes
8
replies
2.6k
views
Comparing reads of multiple BAM files (using getopts for parsing)
bam samtools seqtl getopts
updated 7.1 years ago by 22k • written 7.1 years ago by ▴ 440
0
votes
1
reply
7.2k
views
Comment: C: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
7.1 years ago by m98 ▴ 440
0
votes
1
reply
7.2k
views
Comment: C: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
7.1 years ago by m98 ▴ 440
0
votes
1
reply
5.0k
views
Comment: C: Bam to RPM Bedgraph Conversion
7.1 years ago by m98 ▴ 440
0
votes
1
reply
5.0k
views
Comment: C: Bam to RPM Bedgraph Conversion
7.1 years ago by m98 ▴ 440
0
votes
1
reply
5.0k
views
Comment: C: Bam to RPM Bedgraph Conversion
7.1 years ago by m98 ▴ 440
0
votes
1
reply
2.1k
views
Comment: C: Hosting location for UCSC data hub: cluster v server
7.1 years ago by m98 ▴ 440
0
votes
2
replies
2.1k
views
Comment: C: Hosting location for UCSC data hub: cluster v server
7.1 years ago by m98 ▴ 440
3
votes
6
replies
2.1k
views
Hosting location for UCSC data hub: cluster v server
UCSC data-hub tracks cluster
updated 7.1 years ago by 36k • written 7.1 years ago by ▴ 440
4
votes
13
replies
9.6k
views
Trim_galore on multiple fast.qz files: syntax problem
nsg trim_galore gnu parallel
7.3 years ago by m98 ▴ 440
0
votes
1
reply
9.6k
views
Comment: C: Trim_galore on multiple fast.qz files: syntax problem
7.3 years ago by m98 ▴ 440
0
votes
1
reply
9.6k
views
Comment: C: Trim_galore on multiple fast.qz files: syntax problem
7.3 years ago by m98 ▴ 440
0
votes
0
replies
9.6k
views
Comment: C: Trim_galore on multiple fast.qz files: syntax problem
7.3 years ago by m98 ▴ 440
0
votes
1
reply
9.6k
views
Comment: C: Trim_galore on multiple fast.qz files: syntax problem
7.3 years ago by m98 ▴ 440
11
votes
5
replies
33k
views
FastQC with multiple FASTQ files
ngs fastqc multiple
updated 2.0 years ago by 45k • written 7.3 years ago by ▴ 440
2
votes
1
reply
1.7k
views
Relationship between sequencing lane and ngs dataset
ngs lane flow-cell
updated 7.3 years ago by 154k • written 7.3 years ago by ▴ 440
16
votes
4
replies
12k
views
NGS analysis: how to handle paired-end reads
ngs paired-end reads analysis pipeline
updated 7.4 years ago by ★ 1.4k • written 7.4 years ago by ▴ 440
1
vote
0
replies
59k
views
Comment: C: Definition of minor and major allele and connection with risk, effect, wildtype
7.4 years ago by m98 ▴ 440
0
votes
1
reply
59k
views
Comment: C: Definition of minor and major allele and connection with risk, effect, wildtype
7.4 years ago by m98 ▴ 440
0
votes
1
reply
2.1k
views
Obtaining hazard ratio from beta and chi-square values
probabel cox_regression hazard_ratio
updated 7.8 years ago by 89k • written 7.8 years ago by ▴ 440
0
votes
0
replies
1.8k
views
Problem imputing (large) file into GenABEL
GenABEL IMPUTE2 impute2databel
8.0 years ago by m98 ▴ 440
58 results • Page 1 of 2
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