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1
vote
0
replies
609
views
How to get a partition file for phylogenetic trees?
phylogenetic
python
analysis
partition
2.5 years ago by
YOUSEUFS
▴ 30
0
votes
0
replies
517
views
How to get Pfam domain ID's for a proteome?
pfam
acid
protein
amino
interpro
domains
2.7 years ago by
YOUSEUFS
▴ 30
0
votes
0
replies
1.1k
views
Comment:
Comment: Collapse multifasta file by specific chromosome names
2.8 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
1.1k
views
Comment:
Comment: Collapse multifasta file by specific chromosome names
2.8 years ago by
YOUSEUFS
▴ 30
2
votes
4
replies
1.1k
views
Collapse multifasta file by specific chromosome names
fasta
2.8 years ago by
YOUSEUFS
▴ 30
1
vote
2
replies
930
views
Can you do a sequence alignment with an uneven number of genes? (For phylogenetics)
alignment
phylogenetics
sequence
updated 2.8 years ago by
GenoMax
153k • written 2.8 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
720
views
How to retrieve all genes of interest from GenBank?
ncbi
genbank
phylogenetics
mitochondria
updated 2.8 years ago by
Istvan Albert
103k • written 2.8 years ago by
YOUSEUFS
▴ 30
2
votes
4
replies
975
views
How to extract and concatenate fasta lines that match substring?
fasta
python
updated 2.9 years ago by
rpolicastro
13k • written 2.9 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
975
views
Comment:
Comment: How to extract and concatenate fasta lines that match substring?
2.9 years ago by
YOUSEUFS
▴ 30
0
votes
0
replies
1.6k
views
Comment:
Comment: How to batch download multiple mitochondrial FASTA & GFF files?
3.0 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
1.6k
views
Comment:
Comment: How to batch download multiple mitochondrial FASTA & GFF files?
3.0 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
1.6k
views
Comment:
Comment: How to batch download multiple mitochondrial FASTA & GFF files?
3.0 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
1.6k
views
Comment:
Comment: How to batch download multiple mitochondrial FASTA & GFF files?
3.0 years ago by
YOUSEUFS
▴ 30
2
votes
8
replies
1.6k
views
How to batch download multiple mitochondrial FASTA & GFF files?
ncbi
genomics
mitochondria
genomes
entrez
3.0 years ago by
YOUSEUFS
▴ 30
1
vote
1
reply
912
views
Where are the associated annotation (GFF) files for mitochondrial genomes on NCBI?
phylogenomics
mitochondrial
genomics
NCBI
3.0 years ago by
YOUSEUFS
▴ 30
1
vote
0
replies
912
views
Answer:
Answer: Where are the associated annotation (GFF) files for mitochondrial genomes on NCB
3.0 years ago by
YOUSEUFS
▴ 30
1
vote
1
reply
753
views
Extract reads from specific taxa in blob tools?
genomics
metagenomics
blobtools
updated 2.2 years ago by
Ram
45k • written 3.1 years ago by
YOUSEUFS
▴ 30
1
vote
0
replies
1.1k
views
topGO enrichment: Should the "Gene universe" also contain genes with no GO term?
enrichment
RNA-Seq
go
topGO
4.7 years ago by
YOUSEUFS
▴ 30
0
votes
0
replies
2.6k
views
Comment:
C: GFF file multiple features for 1 gene region, how to collapse into 1?
6.9 years ago by
YOUSEUFS
▴ 30
1
vote
3
replies
2.6k
views
GFF file multiple features for 1 gene region, how to collapse into 1?
RNA-Seq
GFF
BEDTOOLS
updated 6.9 years ago by
Carambakaracho
★ 3.3k • written 6.9 years ago by
YOUSEUFS
▴ 30
8
votes
4
replies
5.5k
views
Mapping contigs & scaffolds to ref genome?
mapping
Assembly
bowtie2
updated 7.1 years ago by
h.mon
35k • written 7.9 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
2.6k
views
Comment:
C: Aligning Draft to Reference genomes, rearranging contigs?
7.9 years ago by
YOUSEUFS
▴ 30
0
votes
3
replies
2.6k
views
Aligning Draft to Reference genomes, rearranging contigs?
mummer
Assembly
alignment
7.9 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
1.9k
views
Comment:
A: .nt assemblage file, can I convert to FASTA?
updated 7.9 years ago by
Pierre Lindenbaum
166k • written 7.9 years ago by
YOUSEUFS
▴ 30
0
votes
3
replies
1.9k
views
.nt assemblage file, can I convert to FASTA?
fasta
file usage
mapping
bowtie
7.9 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
1.5k
views
htseq-count results in missing genes
htseq-count
RNA-Seq
8.0 years ago by
YOUSEUFS
▴ 30
0
votes
0
replies
2.9k
views
Comment:
C: Visualising indexed and sorted bam files
8.1 years ago by
YOUSEUFS
▴ 30
6
votes
5
replies
2.9k
views
Visualising indexed and sorted bam files
rna-seq
updated 8.1 years ago by
Charles Plessy
★ 2.9k • written 8.1 years ago by
YOUSEUFS
▴ 30
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