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4
votes
2
replies
2.6k
views
Custom substitution matrix in biopython pairwise2 aligner
Biopython pairwise2 alignment
updated 5.0 years ago by ▴ 100 • written 5.0 years ago by ▴ 40
5
votes
11
replies
4.6k
views
Retrieve genome in fasta format from ncbi
biopython genome ncbi
updated 5.8 years ago by ▴ 10 • written 6.6 years ago by ▴ 40
2
votes
2
replies
2.2k
views
Exonerate raw score to percent identity
exonerate SmithWaterman alignment
updated 5.9 years ago by ★ 3.3k • written 5.9 years ago by ▴ 40
2
votes
5
replies
2.0k
views
Protein coding annotation from UCSC
ucsc annotation
updated 5.9 years ago by ▴ 670 • written 5.9 years ago by ▴ 40
1
vote
4
replies
1.3k
views
Annotating multiple sequence alignment
TEXshade MAF alignment
updated 6.2 years ago by 10k • written 6.2 years ago by ▴ 40
1
vote
4
replies
5.2k
views
Convert MAF to FASTA
alignment soft ucsc
updated 6.4 years ago by ★ 1.1k • written 6.4 years ago by ▴ 40
4
votes
9
replies
5.0k
views
MAF format help
ucsc mafFrags
6.4 years ago by tim.ivanov.92 ▴ 40
2
votes
5
replies
1.7k
views
Can i use ucsc track browser without a reference organism?
ucsc aln clustalw annotation
updated 6.4 years ago by 20 • written 6.6 years ago by ▴ 40
0
votes
0
replies
871
views
IGV browser for mafFrag output
IGV mafFrag MAF
6.4 years ago by tim.ivanov.92 ▴ 40
1
vote
3
replies
2.2k
views
SRA archive metadata
SRA sra-toolkit ncbi
updated 6.5 years ago by ★ 3.8k • written 6.5 years ago by ▴ 40
2
votes
5
replies
4.2k
views
Get gene counts from *.sam file and annotation
RNA-Seq alignment samtools
6.5 years ago by tim.ivanov.92 ▴ 40
2
votes
5
replies
1.2k
views
*.sra files info
SRAToolkit next-gen
updated 22 months ago by 45k • written 6.6 years ago by ▴ 40
0
votes
0
replies
1.0k
views
Software for genome coordinates from alignment
genome alignment gene
updated 6.6 years ago by 20 • written 6.7 years ago by ▴ 40
2
votes
3
replies
1.9k
views
Strand not working in biopython efetch
biopython efetch strand
updated 6.6 years ago by 22k • written 6.6 years ago by ▴ 40
0
votes
0
replies
1.4k
views
Adding annotation tracks for multiple alignment
visualization MAF multiple-alignment annotation
updated 23 months ago by 45k • written 6.6 years ago by ▴ 40
0
votes
3
replies
3.8k
views
Extract genbank features inside a given range
biopython genbank
updated 6.6 years ago by 22k • written 6.6 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Target sequence from exonerate output
biopython exonerate
6.6 years ago by tim.ivanov.92 ▴ 40
1
vote
2
replies
3.4k
views
How to specify organism taxa in biopythons remote blast cmd?
biopyhon blastx
6.6 years ago by tim.ivanov.92 ▴ 40
0
votes
2
replies
1.2k
views
Genome sequence from protein
sequence alignment genome
6.7 years ago by tim.ivanov.92 ▴ 40
3
votes
8
replies
2.5k
views
Getting genomic regions by local coordinates (protein/transcript)
python ucsc cruzdb
updated 6.7 years ago by 24k • written 6.7 years ago by ▴ 40
0
votes
1
reply
1.6k
views
Exonerate output handling/settingup
alignment exonerate biopython
6.7 years ago by tim.ivanov.92 ▴ 40
0
votes
0
replies
1.0k
views
Blast+ settings to specify region-related accuracy
blast+ alignment
updated 7.1 years ago by 20 • written 7.2 years ago by ▴ 40
1
vote
2
replies
2.8k
views
Setting up blastn to retrieve FULL query sequence
blastn alignment
updated 7.2 years ago by 27k • written 7.2 years ago by ▴ 40
1
vote
3
replies
2.9k
views
Differential genes expression in knockdown experiment
Deseq2 Knockout edgeR tximport RSEM
7.3 years ago by tim.ivanov.92 ▴ 40
1
vote
2
replies
2.5k
views
nextflow implementation of grape pipeline
software error RNA-Seq
7.4 years ago by tim.ivanov.92 ▴ 40
0
votes
9
replies
2.9k
views
liftover between close species
genome
7.5 years ago by tim.ivanov.92 ▴ 40
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