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342
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Comment: Comment: allele frequency from different read depths
4 months ago by rthapa ▴ 50
0
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1
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342
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Comment: Comment: allele frequency from different read depths
4 months ago by rthapa ▴ 50
1
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5
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342
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allele frequency from different read depths
allele depth frequency vcf read
updated 4 months ago by ▴ 410 • written 4 months ago by ▴ 50
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0
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243
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Comment: Comment: subset of paired end reads from bam file or fastq file of different depth
5 months ago by rthapa ▴ 50
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2
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243
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subset of paired end reads from bam file or fastq file of different depth
depth ShortRead samtools read
5 months ago by rthapa ▴ 50
0
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3
replies
390
views
Issue on downloading fastPHASE in Mac
fastPHASE
updated 5 months ago by ★ 1.0k • written 14 months ago by ▴ 50
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1
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357
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Comment: Comment: Fis, Ho and He calculation from Whole Genome Seq data
5 months ago by rthapa ▴ 50
0
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0
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212
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Discrepancy in structural variants results from mauve and MUM&Co
assembly structural variants mauve MUMandCo
updated 7 months ago by 20 • written 8 months ago by ▴ 50
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0
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291
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Identification of presence of genes by aligning the illumina reads to reference genome with Geneious
geneious alignment mapping
7 months ago by rthapa ▴ 50
0
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0
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155
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finding coverage of particular gene sequence from illumina short reads
coverage illumina
7 months ago by rthapa ▴ 50
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0
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3.3k
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Comment: C: Whole-genome alignment of two or more bacterial genomes - find structural varian
7 months ago by rthapa ▴ 50
0
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1
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1.7k
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Comment: C: mummer dot plot
8 months ago by rthapa ▴ 50
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0
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709
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Comment: C: MUMmer plot visualization
8 months ago by rthapa ▴ 50
0
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1
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709
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Comment: C: MUMmer plot visualization
updated 8 months ago by 107k • written 8 months ago by ▴ 50
0
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1
reply
709
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Comment: C: MUMmer plot visualization
updated 8 months ago by 107k • written 8 months ago by ▴ 50
0
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6
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709
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MUMmer plot visualization
MUMmer plot
updated 8 months ago by 107k • written 8 months ago by ▴ 50
0
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0
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271
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MUMmer for structural variant call
MUMmer structural variants circlator
8 months ago by rthapa ▴ 50
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1
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448
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Comment: C: Rotate circular contigs to replication initiator protein (ex. dnaA, repA)
8 months ago by rthapa ▴ 50
0
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1
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448
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Comment: C: Rotate circular contigs to replication initiator protein (ex. dnaA, repA)
8 months ago by rthapa ▴ 50
0
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0
replies
231
views
Assembly based structural variants detection
Assembly structural variants syri mumandco
8 months ago by rthapa ▴ 50
0
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0
replies
987
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Comment: C: Mauve alignment vs samtools for SNP calling
8 months ago by rthapa ▴ 50
0
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1
reply
987
views
Comment: C: Mauve alignment vs samtools for SNP calling
8 months ago by rthapa ▴ 50
0
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1
reply
987
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Comment: C: Mauve alignment vs samtools for SNP calling
8 months ago by rthapa ▴ 50
0
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0
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178
views
Structural variants call from circular genome
Assembly structural variants bacterial genome
8 months ago by rthapa ▴ 50
0
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1
reply
352
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Comment: C: Assembly based structural variants call from bacterial genome
8 months ago by rthapa ▴ 50
0
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3
replies
352
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Assembly based structural variants call from bacterial genome
nanopore structural variants Assembly
8 months ago by rthapa ▴ 50
0
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0
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436
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Comment: C: Hybrid Assembly approaches and advantage of having a circular genome assembly
8 months ago by rthapa ▴ 50
0
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0
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407
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Comment: C: Structural variants detection from assembled genome from Nanopore sequence data
8 months ago by rthapa ▴ 50
0
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1
reply
407
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Comment: C: Structural variants detection from assembled genome from Nanopore sequence data
9 months ago by rthapa ▴ 50
0
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4
replies
407
views
Structural variants detection from assembled genome from Nanopore sequence data
genome Assembly nanopore
updated 9 months ago by ★ 1.6k • written 9 months ago by ▴ 50
0
votes
1
reply
424
views
Comment: C: Running Mauve on circular genomes
9 months ago by rthapa ▴ 50
0
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1
reply
424
views
Comment: C: Running Mauve on circular genomes
9 months ago by rthapa ▴ 50
0
votes
1
reply
424
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Comment: C: Running Mauve on circular genomes
9 months ago by rthapa ▴ 50
2
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5
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568
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bacterial genome assembly output from canu
bacteria genome assembly canu
updated 9 months ago by ▴ 130 • written 10 months ago by ▴ 50
1
vote
5
replies
488
views
de novo genome assembly of bacterial genome
assembly genome bacteria
updated 10 months ago by 33k • written 10 months ago by ▴ 50
0
votes
1
reply
568
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Comment: C: bacterial genome assembly output from canu
10 months ago by rthapa ▴ 50
0
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1
reply
462
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structural variants from mauve
structural variants mauve de novo assembly
updated 10 months ago by 20 • written 10 months ago by ▴ 50
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0
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488
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Comment: C: de novo genome assembly of bacterial genome
10 months ago by rthapa ▴ 50
0
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1
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328
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Comment: C: bacterial genome assembly with canu and alignment with reference genome with mau
updated 10 months ago by 107k • written 10 months ago by ▴ 50
0
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3
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328
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bacterial genome assembly with canu and alignment with reference genome with mauve
Assembly canu mauve
10 months ago by rthapa ▴ 50
0
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0
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858
views
Comment: C: Are these good parameters for bacterial genome assembly?
10 months ago by rthapa ▴ 50
0
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0
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295
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Comment: C: bacterial genome assembly with nano pore sequence data
11 months ago by rthapa ▴ 50
0
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0
replies
295
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Comment: C: bacterial genome assembly with nano pore sequence data
11 months ago by rthapa ▴ 50
0
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3
replies
295
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bacterial genome assembly with nano pore sequence data
assembly nanopore
11 months ago by rthapa ▴ 50
0
votes
0
replies
322
views
Vst estimation across different populations from copy number data
genome Copy number Vst
12 months ago by rthapa ▴ 50
1
vote
0
replies
344
views
Comment: C: Obtain gene names for the SNPs from GWAS result
12 months ago by rthapa ▴ 50
0
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1
reply
677
views
Comment: C: mauve for contigs
12 months ago by rthapa ▴ 50
0
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1
reply
677
views
Comment: C: mauve for contigs
13 months ago by rthapa ▴ 50
0
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5
replies
677
views
mauve for contigs
genome mauve
updated 13 months ago by ▴ 190 • written 13 months ago by ▴ 50
0
votes
1
reply
279
views
Copy number variation data for population structure analysis
CNV
updated 13 months ago by ▴ 30 • written 13 months ago by ▴ 50
106 results • Page 1 of 3
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