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1.3k
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codon adaptation index (CAI) estimation
codon-usage
updated 9 months ago by 45k • written 6.0 years ago by ▴ 90
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0
replies
531
views
Bacterial genome alignment with mauve
Bacteria mauve genome
18 months ago by rthapa ▴ 90
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1
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2.6k
views
Comment: Comment: allele frequency from different read depths
4.4 years ago by rthapa ▴ 90
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1
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2.6k
views
Comment: Comment: allele frequency from different read depths
4.4 years ago by rthapa ▴ 90
1
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5
replies
2.6k
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allele frequency from different read depths
allele depth frequency vcf read
updated 4.4 years ago by ▴ 430 • written 4.4 years ago by ▴ 90
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0
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1.5k
views
Comment: Comment: subset of paired end reads from bam file or fastq file of different depth
4.5 years ago by rthapa ▴ 90
0
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2
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1.5k
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subset of paired end reads from bam file or fastq file of different depth
depth ShortRead samtools read
4.5 years ago by rthapa ▴ 90
0
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3
replies
1.4k
views
Issue on downloading fastPHASE in Mac
fastPHASE
updated 4.5 years ago by 2.9k • written 5.2 years ago by ▴ 90
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1
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1.7k
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Comment: Comment: Fis, Ho and He calculation from Whole Genome Seq data
4.5 years ago by rthapa ▴ 90
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0
replies
826
views
Discrepancy in structural variants results from mauve and MUM&Co
assembly structural variants mauve MUMandCo
updated 4.7 years ago by 20 • written 4.7 years ago by ▴ 90
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0
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862
views
Identification of presence of genes by aligning the illumina reads to reference genome with Geneious
geneious alignment mapping
4.7 years ago by rthapa ▴ 90
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0
replies
596
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finding coverage of particular gene sequence from illumina short reads
coverage illumina
4.7 years ago by rthapa ▴ 90
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0
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7.8k
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Comment: C: Whole-genome alignment of two or more bacterial genomes - find structural varian
4.7 years ago by rthapa ▴ 90
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1
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5.1k
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Comment: C: mummer dot plot
4.7 years ago by rthapa ▴ 90
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1
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5.2k
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Comment: C: MUMmer plot visualization
4.7 years ago by rthapa ▴ 90
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1
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5.2k
views
Comment: C: MUMmer plot visualization
updated 4.7 years ago by 154k • written 4.7 years ago by ▴ 90
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1
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5.2k
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Comment: C: MUMmer plot visualization
updated 4.7 years ago by 154k • written 4.7 years ago by ▴ 90
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7
replies
5.2k
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MUMmer plot visualization
MUMmer plot
updated 20 months ago by • 0 • written 4.7 years ago by ▴ 90
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0
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982
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MUMmer for structural variant call
MUMmer structural variants circlator
4.7 years ago by rthapa ▴ 90
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1
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2.6k
views
Comment: C: Rotate circular contigs to replication initiator protein (ex. dnaA, repA)
4.7 years ago by rthapa ▴ 90
0
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1
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2.6k
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Comment: C: Rotate circular contigs to replication initiator protein (ex. dnaA, repA)
4.7 years ago by rthapa ▴ 90
0
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0
replies
851
views
Assembly based structural variants detection
Assembly structural variants syri mumandco
4.7 years ago by rthapa ▴ 90
0
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0
replies
2.9k
views
Comment: C: Mauve alignment vs samtools for SNP calling
4.7 years ago by rthapa ▴ 90
0
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1
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2.9k
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Comment: C: Mauve alignment vs samtools for SNP calling
4.7 years ago by rthapa ▴ 90
0
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1
reply
2.9k
views
Comment: C: Mauve alignment vs samtools for SNP calling
4.7 years ago by rthapa ▴ 90
0
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0
replies
777
views
Structural variants call from circular genome
Assembly structural variants bacterial genome
4.7 years ago by rthapa ▴ 90
0
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1
reply
1.4k
views
Comment: C: Assembly based structural variants call from bacterial genome
4.8 years ago by rthapa ▴ 90
0
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3
replies
1.4k
views
Assembly based structural variants call from bacterial genome
nanopore structural variants Assembly
4.8 years ago by rthapa ▴ 90
0
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0
replies
1.5k
views
Comment: C: Hybrid Assembly approaches and advantage of having a circular genome assembly
4.8 years ago by rthapa ▴ 90
0
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0
replies
1.7k
views
Comment: C: Structural variants detection from assembled genome from Nanopore sequence data
4.8 years ago by rthapa ▴ 90
0
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1
reply
1.7k
views
Comment: C: Structural variants detection from assembled genome from Nanopore sequence data
4.8 years ago by rthapa ▴ 90
0
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4
replies
1.7k
views
Structural variants detection from assembled genome from Nanopore sequence data
genome Assembly nanopore
updated 4.8 years ago by ★ 2.0k • written 4.8 years ago by ▴ 90
0
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1
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2.2k
views
Comment: C: Running Mauve on circular genomes
4.8 years ago by rthapa ▴ 90
0
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1
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2.2k
views
Comment: C: Running Mauve on circular genomes
4.8 years ago by rthapa ▴ 90
0
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1
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2.2k
views
Comment: C: Running Mauve on circular genomes
4.8 years ago by rthapa ▴ 90
2
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5
replies
2.0k
views
bacterial genome assembly output from canu
bacteria genome assembly canu
updated 4.8 years ago by ▴ 130 • written 4.9 years ago by ▴ 90
1
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5
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2.0k
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de novo genome assembly of bacterial genome
assembly genome bacteria
updated 4.9 years ago by 35k • written 4.9 years ago by ▴ 90
0
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1
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2.0k
views
Comment: C: bacterial genome assembly output from canu
4.9 years ago by rthapa ▴ 90
0
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1
reply
1.3k
views
structural variants from mauve
structural variants mauve de novo assembly
updated 4.9 years ago by 20 • written 4.9 years ago by ▴ 90
0
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0
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2.0k
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Comment: C: de novo genome assembly of bacterial genome
4.9 years ago by rthapa ▴ 90
0
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1
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1.4k
views
Comment: C: bacterial genome assembly with canu and alignment with reference genome with mau
updated 4.9 years ago by 154k • written 4.9 years ago by ▴ 90
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3
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1.4k
views
bacterial genome assembly with canu and alignment with reference genome with mauve
Assembly canu mauve
4.9 years ago by rthapa ▴ 90
0
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0
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1.7k
views
Comment: C: Are these good parameters for bacterial genome assembly?
4.9 years ago by rthapa ▴ 90
0
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0
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1.2k
views
Comment: C: bacterial genome assembly with nano pore sequence data
5.0 years ago by rthapa ▴ 90
0
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0
replies
1.2k
views
Comment: C: bacterial genome assembly with nano pore sequence data
5.0 years ago by rthapa ▴ 90
0
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3
replies
1.2k
views
bacterial genome assembly with nano pore sequence data
assembly nanopore
5.0 years ago by rthapa ▴ 90
0
votes
0
replies
1.1k
views
Vst estimation across different populations from copy number data
genome Copy number Vst
5.1 years ago by rthapa ▴ 90
1
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0
replies
1.2k
views
Comment: C: Obtain gene names for the SNPs from GWAS result
5.1 years ago by rthapa ▴ 90
0
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1
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3.4k
views
Comment: C: mauve for contigs
5.1 years ago by rthapa ▴ 90
0
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1
reply
3.4k
views
Comment: C: mauve for contigs
5.1 years ago by rthapa ▴ 90
107 results • Page 1 of 3
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