Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
4
replies
3.9k
views
update-chr issues with PLINK 1.9
plink
updated 3.4 years ago by 20 • written 4.3 years ago by ▴ 750
0
votes
0
replies
785
views
Comment: C: Is there a reason to limit dummy coding these alleles as 0 or 1 in this regressi
3.5 years ago by curious ▴ 750
1
vote
2
replies
785
views
Is there a reason to limit dummy coding these alleles as 0 or 1 in this regression model example, instead of allowing values of 0,1,or 2?
logistic regression gwas
3.5 years ago by curious ▴ 750
0
votes
0
replies
726
views
Comment: C: What is the smallest number of cases you can have in a GWAS before interpretatio
3.5 years ago by curious ▴ 750
1
vote
3
replies
726
views
What is the smallest number of cases you can have in a GWAS before interpretation starts becoming troublesome
gwas
3.5 years ago by curious ▴ 750
0
votes
0
replies
1.6k
views
Comment: C: logistic regression using HLA alllelic data
3.5 years ago by curious ▴ 750
7
votes
5
replies
1.3k
views
Is there anyway to get a unix parallel command to write to standard output
unix
updated 3.5 years ago by ▴ 310 • written 3.5 years ago by ▴ 750
0
votes
0
replies
1.3k
views
Comment: C: Is there anyway to get a unix parallel command to write to standard output
3.5 years ago by curious ▴ 750
0
votes
0
replies
683
views
Is this the correct notation for the logistic regression I am trying to describe? I am very new to statistics notation and LaTeX
latex logistic regression association
3.5 years ago by curious ▴ 750
0
votes
1
reply
1.0k
views
Comment: C: How to do a multi-snp/haplotype based GWAS instead of a single snp GWAS in R?
3.5 years ago by curious ▴ 750
0
votes
1
reply
1.0k
views
Comment: C: How to do a multi-snp/haplotype based GWAS instead of a single snp GWAS in R?
3.5 years ago by curious ▴ 750
0
votes
5
replies
1.0k
views
How to do a multi-snp/haplotype based GWAS instead of a single snp GWAS in R?
gwas logistic glm
3.5 years ago by curious ▴ 750
0
votes
0
replies
1.7k
views
Comment: C: bcftools subset by ids stored in a unix variable
3.5 years ago by curious ▴ 750
0
votes
2
replies
1.7k
views
bcftools subset by ids stored in a unix variable
bcftools
updated 3.5 years ago by 161k • written 3.5 years ago by ▴ 750
0
votes
0
replies
1.6k
views
Answer: A: Is there any wat to access the input of a snakemake rule in the output
3.5 years ago by curious ▴ 750
0
votes
1
reply
1.6k
views
Is there any wat to access the input of a snakemake rule in the output
snakemake
3.5 years ago by curious ▴ 750
0
votes
0
replies
729
views
Comment: C: Why are structural variants typically not tagged as well as SNPs?
3.6 years ago by curious ▴ 750
0
votes
0
replies
729
views
Comment: C: Why are structural variants typically not tagged as well as SNPs?
3.6 years ago by curious ▴ 750
1
vote
3
replies
729
views
Why are structural variants typically not tagged as well as SNPs?
wgs imputation structural variation
3.6 years ago by curious ▴ 750
0
votes
0
replies
738
views
How is genotype imputation used in variant calling pipelines
variant calling 1000g
3.6 years ago by curious ▴ 750
0
votes
0
replies
2.9k
views
Comment: C: How to do a Haplotype based GWAS?
3.6 years ago by curious ▴ 750
1
vote
2
replies
1.2k
views
Is GWAS genotype QC to exclude samples with inbreeding coefficient typically applied to only autosomes?
gwas plink
updated 3.6 years ago by 20 • written 3.7 years ago by ▴ 750
1
vote
0
replies
1.2k
views
Is it pretty common to have "reverse complemented alleles" when lifting over a vcf from hg19 to hg38?
liftover gatk picard
3.6 years ago by curious ▴ 750
0
votes
0
replies
2.6k
views
Comment: C: Allele frequency calculation for genotype dosage value
3.6 years ago by curious ▴ 750
0
votes
0
replies
683
views
Answer: A: Microarry (GSA) manifest file and CytoSNP-850K manifest file comparison
3.6 years ago by curious ▴ 750
1
vote
1
reply
969
views
Answer: A: Why different reference panels change the signal for a SNP?
3.6 years ago by curious ▴ 750
2
votes
1
reply
2.8k
views
What does it mean to calculate genomic control (lambda) at 10th percentile for GWAS
statistics
updated 3.7 years ago by 88k • written 3.8 years ago by ▴ 750
0
votes
0
replies
3.5k
views
Comment: C: Switch ref/alt alleles vcf file
3.7 years ago by curious ▴ 750
0
votes
0
replies
1.1k
views
How does beagle get phase for sites that are NOT in the reference panel
beagle phasing imputation
3.7 years ago by curious ▴ 750
2
votes
3
replies
1.2k
views
Does 1000 genomes have a flat file with allele frequencies for each site anywhere?
1000 genomes
updated 3.7 years ago by ★ 3.8k • written 3.7 years ago by ▴ 750
0
votes
0
replies
1.2k
views
Answer: A: Does 1000 genomes have a flat file with allele frequencies for each site anywher
3.7 years ago by curious ▴ 750
0
votes
1
reply
4.2k
views
Comment: C: B allele frequency (BAF)
3.7 years ago by curious ▴ 750
2
votes
2
replies
631
views
How is 1000 genomes so accessible when many other genotype/sequencing projects are fairly restricted in their access?
1000 genomes
updated 3.7 years ago by 142k • written 3.7 years ago by ▴ 750
0
votes
0
replies
1.5k
views
Comment: C: What is the current standard for HLA allele typing prediction from SNP data?
3.7 years ago by curious ▴ 750
1
vote
0
replies
2.7k
views
Comment: C: Post-imputation QC GWAS analysis
3.7 years ago by curious ▴ 750
2
votes
5
replies
1.3k
views
Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/ come from?
repeats golden path
3.7 years ago by curious ▴ 750
0
votes
0
replies
1.3k
views
Answer: A: Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/golde
3.7 years ago by curious ▴ 750
0
votes
0
replies
1.3k
views
Comment: C: Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/golde
3.7 years ago by curious ▴ 750
0
votes
0
replies
1.3k
views
Comment: C: Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/golde
3.7 years ago by curious ▴ 750
0
votes
1
reply
674
views
Comment: C: Refrence datasets for imputation
3.7 years ago by curious ▴ 750
2
votes
0
replies
2.7k
views
Answer: C: Post-imputation QC GWAS analysis
3.7 years ago by curious ▴ 750
0
votes
0
replies
533
views
How many samples are too few for Hardy Weinberg equilibrium test?
gwas
3.7 years ago by curious ▴ 750
0
votes
1
reply
933
views
Comment: C: Can variant callers distinguish between a snp and the end of an indel?
3.7 years ago by curious ▴ 750
0
votes
1
reply
933
views
Comment: C: Can variant callers distinguish between a snp and the end of an indel?
3.7 years ago by curious ▴ 750
0
votes
0
replies
933
views
Comment: C: Can variant callers distinguish between a snp and the end of an indel?
3.7 years ago by curious ▴ 750
3
votes
6
replies
933
views
Can variant callers distinguish between a snp and the end of an indel?
1000 genomes vcf variant calling
updated 3.7 years ago by 43k • written 3.7 years ago by ▴ 750
0
votes
0
replies
2.3k
views
Comment: C: Differentially expressed genes machine learning classifer
3.7 years ago by curious ▴ 750
1
vote
1
reply
2.3k
views
Comment: C: Differentially expressed genes machine learning classifer
3.7 years ago by curious ▴ 750
0
votes
0
replies
3.7k
views
Answer: A: IDAT to VCF conversion
3.7 years ago by curious ▴ 750
0
votes
0
replies
1.2k
views
Comment: C: Is GWAS genotype QC to exclude samples with inbreeding coefficient typically app
3.7 years ago by curious ▴ 750
299 results • Page 3 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6