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2.9k
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Suggest vcf filtered parameter for gatk VariantFiltration
gatk4 snps
updated 3.1 years ago by ▴ 130 • written 4.9 years ago by ▴ 140
0
votes
0
replies
1.7k
views
Answer: A: How to make scaffold from contigs
3.7 years ago by Mbillah ▴ 140
0
votes
0
replies
1.0k
views
Answer: A: Platanus: command not found
3.7 years ago by Mbillah ▴ 140
2
votes
6
replies
3.6k
views
Duplicate variants in same position: bcftools
bcftools vcf
updated 3.7 years ago by ▴ 40 • written 5.2 years ago by ▴ 140
0
votes
0
replies
1.3k
views
Comment: C: NGSadmix segmentation 11 error message
4.8 years ago by Mbillah ▴ 140
2
votes
2
replies
2.6k
views
Merge CNVnator and Lumpy to find out copy number variants
CNVs SVs
updated 5.0 years ago by ▴ 10 • written 5.4 years ago by ▴ 140
3
votes
2
replies
2.4k
views
Gene Count from GFF3 file
Interproscan annotation
5.1 years ago by Mbillah ▴ 140
2
votes
1
reply
1.0k
views
MD5 for EBI VCF file submission
SNP md5
updated 5.2 years ago by 8.3k • written 5.2 years ago by ▴ 140
0
votes
1
reply
845
views
Run abacas for multiple scaffold (20k +)
Assembly
5.2 years ago by Mbillah ▴ 140
3
votes
2
replies
1.2k
views
dbsnp for capra hircus
snp indels variants
5.2 years ago by Mbillah ▴ 140
2
votes
1
reply
860
views
blastx to compute complete, partial or missing genes
blast blastx gene
updated 5.3 years ago by 15k • written 5.3 years ago by ▴ 140
0
votes
1
reply
1.0k
views
abacas assembly contig to chromosome
assembly
5.3 years ago by Mbillah ▴ 140
1
vote
3
replies
1.4k
views
Abyss (Optimizing the parameter k)
abyss Assembly kmer
updated 5.4 years ago by 20 • written 5.5 years ago by ▴ 140
0
votes
2
replies
3.8k
views
Comment: C: Genome Size Estimation
5.4 years ago by Mbillah ▴ 140
0
votes
1
reply
3.8k
views
Comment: C: Genome Size Estimation
5.4 years ago by Mbillah ▴ 140
3
votes
7
replies
3.8k
views
Genome Size Estimation
genome
5.4 years ago by Mbillah ▴ 140
0
votes
0
replies
2.2k
views
Comment: C: Variants calling by bcftools
5.4 years ago by Mbillah ▴ 140
3
votes
3
replies
2.2k
views
Variants calling by bcftools
SNP indel alignment
updated 5.4 years ago by 82k • written 5.4 years ago by ▴ 140
0
votes
1
reply
2.0k
views
Comment: C: mapped reads and unmapped reads not equal total number of reads
5.4 years ago by Mbillah ▴ 140
4
votes
4
replies
2.0k
views
mapped reads and unmapped reads not equal total number of reads
alignment
5.4 years ago by Mbillah ▴ 140
1
vote
0
replies
3.8k
views
Comment: C: How sickle (adaptive trimming tool) work.
5.4 years ago by Mbillah ▴ 140
3
votes
3
replies
3.8k
views
How sickle (adaptive trimming tool) work.
sequence
updated 5.4 years ago by 161k • written 5.4 years ago by ▴ 140
5
votes
8
replies
1.4k
views
How can I find Variants position by GATK and Samtools
SNP samtools GATK
updated 5.4 years ago by 20 • written 5.5 years ago by ▴ 140
0
votes
0
replies
783
views
Comment: C: Overlapped Variations Detecting
5.4 years ago by Mbillah ▴ 140
0
votes
2
replies
783
views
Overlapped Variations Detecting
SNP
updated 5.4 years ago by 23k • written 5.4 years ago by ▴ 140
13
votes
10
replies
2.3k
views
Implement ensembl gene annotation pipeline for my assembly
gene annotation ensembl
updated 5.5 years ago by 47k • written 5.5 years ago by ▴ 140
1
vote
1
reply
2.3k
views
Comment: C: How can implement ensembl gene annotation pipeline for my data?
5.5 years ago by Mbillah ▴ 140
1
vote
1
reply
2.3k
views
Comment: C: How can implement ensembl gene annotation pipeline for my data?
5.5 years ago by Mbillah ▴ 140
0
votes
2
replies
2.3k
views
Comment: C: How can implement ensembl gene annotation pipeline for my data?
5.5 years ago by Mbillah ▴ 140
0
votes
0
replies
1.3k
views
Comment: C: How can i increase variants accuracy?
5.5 years ago by Mbillah ▴ 140
0
votes
1
reply
1.3k
views
Comment: C: How can i increase variants accuracy?
5.5 years ago by Mbillah ▴ 140
6
votes
3
replies
1.3k
views
How can I assembly big genome by abyss with 128 Gb ram
Assembly
updated 5.5 years ago by ★ 1.7k • written 5.5 years ago by ▴ 140
0
votes
0
replies
902
views
Comment: C: Needed gatk latest version pipline for variant calling
5.5 years ago by Mbillah ▴ 140
2
votes
2
replies
902
views
Needed gatk latest version pipline for variant calling
gatk
5.5 years ago by Mbillah ▴ 140
0
votes
0
replies
1.4k
views
Comment: C: How can I find Variants position by GATK and Samtools
5.5 years ago by Mbillah ▴ 140
0
votes
2
replies
1.4k
views
Comment: C: How can I find Variants position by GATK and Samtools
5.5 years ago by Mbillah ▴ 140
0
votes
1
reply
1.4k
views
Comment: C: How can I find Variants position by GATK and Samtools
5.5 years ago by Mbillah ▴ 140
0
votes
0
replies
3.1k
views
Comment: C: ABySS path setup for temporary files
5.5 years ago by Mbillah ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: ABySS path setup for temporary files
5.5 years ago by Mbillah ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: ABySS path setup for temporary files
5.5 years ago by Mbillah ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: ABySS path setup for temporary files
5.5 years ago by Mbillah ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: ABySS path setup for temporary files
5.5 years ago by Mbillah ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: ABySS path setup for temporary files
5.5 years ago by Mbillah ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: ABySS path setup for temporary files
5.5 years ago by Mbillah ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: ABySS path setup for temporary files
5.5 years ago by Mbillah ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: ABySS path setup for temporary files
5.5 years ago by Mbillah ▴ 140
0
votes
0
replies
1.6k
views
Comment: C: Abyss run time
5.5 years ago by Mbillah ▴ 140
9
votes
26
replies
3.1k
views
ABySS path setup for temporary files
assembly abyss
updated 5.5 years ago by 6.4k • written 5.5 years ago by ▴ 140
0
votes
4
replies
1.6k
views
Abyss run time
assembly abyss
5.5 years ago by Mbillah ▴ 140
0
votes
0
replies
1.6k
views
Comment: C: Abyss run time
5.5 years ago by Mbillah ▴ 140
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