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908
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TSS Enrichment error in Signac
Signac scRNA-ATAC ensdb
21 months ago by kousi31 ▴ 100
2
votes
1
reply
1.7k
views
How to solve unloadNamespace(package) : namespace in R
R
updated 21 months ago by 45k • written 21 months ago by ▴ 100
1
vote
2
replies
820
views
How to use gsub inside mapply to assign names to Seurat objects
scATAC-seq seurat
updated 21 months ago by 45k • written 21 months ago by ▴ 100
1
vote
1
reply
820
views
Answer: Answer: How to use gsub inside mapply to assign names to Seurat objects
updated 21 months ago by 45k • written 21 months ago by ▴ 100
0
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2
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1.5k
views
Comment: Comment: Iterate through Seurat object to add patient information
updated 21 months ago by 45k • written 21 months ago by ▴ 100
0
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1
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1.5k
views
Comment: Comment: Iterate through Seurat object to add patient information
21 months ago by kousi31 ▴ 100
0
votes
2
replies
1.5k
views
Comment: Comment: Iterate through Seurat object to add patient information
21 months ago by kousi31 ▴ 100
0
votes
7
replies
1.5k
views
Iterate through Seurat object to add patient information
R Seurat
updated 21 months ago by 45k • written 21 months ago by ▴ 100
2
votes
1
reply
753
views
will the features.tsv file from 10X chromium be same for all donor individuals?
scRNA-seq chromium 10x single-cell
updated 21 months ago by 45k • written 21 months ago by ▴ 100
0
votes
1
reply
1.7k
views
cytoscape: Network Analyser error - Network interpretation null
software error cytoscape
updated 5.2 years ago by ▴ 50 • written 5.4 years ago by ▴ 100
4
votes
12
replies
6.8k
views
Salmon installation error
software error
updated 5.3 years ago by • 0 • written 6.5 years ago by ▴ 100
0
votes
1
reply
3.7k
views
Comment: C: How to make box plot for different gene types
5.3 years ago by kousi31 ▴ 100
0
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1
reply
3.7k
views
Comment: C: How to make box plot for different gene types
5.3 years ago by kousi31 ▴ 100
7
votes
4
replies
3.7k
views
How to make box plot for different gene types
R Box plot RNA-Seq
updated 3.7 years ago by 21k • written 5.3 years ago by ▴ 100
0
votes
2
replies
1.8k
views
Extracting features corresponding to low entropy regions from RNAfold output
RNAfold RNA secondary structure
updated 5.3 years ago by ▴ 230 • written 5.3 years ago by ▴ 100
0
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1
reply
7.4k
views
Comment: C: chromoMap- R package for Interactive visualization and Annotation of chromosomes
5.3 years ago by kousi31 ▴ 100
0
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1
reply
3.2k
views
Comment: A: ChromoMap Error in 1:nrow(temp.df) : argument of length 0
5.3 years ago by kousi31 ▴ 100
0
votes
3
replies
3.2k
views
ChromoMap Error in 1:nrow(temp.df) : argument of length 0
R chromoMap software error
5.3 years ago by kousi31 ▴ 100
0
votes
0
replies
1.9k
views
Comment: A: Specifying unequal replicates in deseq2 with htseq-count input
5.3 years ago by kousi31 ▴ 100
2
votes
4
replies
1.9k
views
Specifying unequal replicates in deseq2 with htseq-count input
DEseq2 RNA-Seq DE analysis
5.3 years ago by kousi31 ▴ 100
2
votes
1
reply
1.3k
views
Enhanced volcano plot - Over-ride colouring scheme with custom key-value pairs for both log2FC and p value
enhanced volcano plot software R deseq2
updated 5.3 years ago by 89k • written 5.3 years ago by ▴ 100
0
votes
1
reply
2.6k
views
Comment: C: Error while running CPAT
5.3 years ago by kousi31 ▴ 100
0
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1
reply
2.6k
views
Comment: C: Error while running CPAT
5.3 years ago by kousi31 ▴ 100
0
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0
replies
2.6k
views
Comment: C: Error while running CPAT
5.3 years ago by kousi31 ▴ 100
0
votes
2
replies
2.6k
views
Comment: C: Error while running CPAT
5.3 years ago by kousi31 ▴ 100
1
vote
8
replies
2.6k
views
Error while running CPAT
software error
5.3 years ago by kousi31 ▴ 100
0
votes
1
reply
2.5k
views
Comment: A: How to prepare ranked-gene list for statistical enrichment test in PANTHER datab
5.4 years ago by kousi31 ▴ 100
0
votes
3
replies
2.5k
views
How to prepare ranked-gene list for statistical enrichment test in PANTHER database
panther ranked-gene-list pathway-enrichment
5.4 years ago by kousi31 ▴ 100
1
vote
1
reply
6.4k
views
Comment: C: How to select multiple nodes with mouse - left click and drag
5.4 years ago by kousi31 ▴ 100
7
votes
3
replies
6.4k
views
How to select multiple nodes with mouse - left click and drag
cytoscape software
updated 20 months ago by • 0 • written 5.4 years ago by ▴ 100
3
votes
2
replies
1.6k
views
Merged vs. Ensembl GTF for htseq-count
RNA-Seq htseq-count
updated 5.4 years ago by ★ 4.2k • written 5.5 years ago by ▴ 100
2
votes
3
replies
2.3k
views
How to use output of PANTHER Enrichment Test as input to cytoscape
panther cytoscape
5.4 years ago by kousi31 ▴ 100
0
votes
1
reply
2.3k
views
Comment: A: How to use output of PANTHER Enrichment Test as input to cytoscape
5.4 years ago by kousi31 ▴ 100
0
votes
1
reply
2.1k
views
KEGG database for GSEA
GSEA kegg RNA-Seq enrichment-pathway analysis
5.4 years ago by kousi31 ▴ 100
0
votes
1
reply
3.2k
views
Comment: C: How to feed the sequence dictionary created with multifasta file into python fun
5.6 years ago by kousi31 ▴ 100
1
vote
3
replies
3.2k
views
How to feed the sequence dictionary created with multifasta file into python function
python multi-fasta function
updated 5.6 years ago by ▴ 650 • written 5.6 years ago by ▴ 100
0
votes
0
replies
770
views
Do anyone know how to interpret Graphclust ouput files?
Graphclust RNA secondary structure
6.1 years ago by kousi31 ▴ 100
0
votes
0
replies
2.1k
views
Comment: C: Installation error - RNAPLEX
6.1 years ago by kousi31 ▴ 100
1
vote
3
replies
2.1k
views
Installation error - RNAPLEX
software error RNAplex makefile
updated 6.1 years ago by 90k • written 6.1 years ago by ▴ 100
8
votes
13
replies
6.1k
views
8 follow
Doubt - installing LncTar software
software installation Lnctar perl
updated 2.4 years ago by • 0 • written 6.2 years ago by ▴ 100
1
vote
1
reply
2.8k
views
Comment: C: How to get multiple alignments from different species using lastz?
6.2 years ago by kousi31 ▴ 100
0
votes
2
replies
1.6k
views
Which axis to look for in PCA plot to understand the sample clustering
PCA RNA-Seq QC clustering
updated 6.2 years ago by 15k • written 6.2 years ago by ▴ 100
0
votes
0
replies
6.1k
views
Comment: C: Doubt - installing LncTar software
6.2 years ago by kousi31 ▴ 100
0
votes
1
reply
6.1k
views
Comment: C: Doubt - installing LncTar software
6.2 years ago by kousi31 ▴ 100
0
votes
0
replies
1.8k
views
Comment: C: How to obtain multiple sequence alignments of genomes of selected vertebrate spe
6.3 years ago by kousi31 ▴ 100
0
votes
1
reply
878
views
FIRE installation error
software error
6.3 years ago by kousi31 ▴ 100
0
votes
0
replies
1.8k
views
Comment: C: How to obtain multiple sequence alignments of genomes of selected vertebrate spe
6.3 years ago by kousi31 ▴ 100
0
votes
3
replies
1.8k
views
How to obtain multiple sequence alignments of genomes of selected vertebrate species?
multiple-sequence-alignment
updated 2.5 years ago by 45k • written 6.3 years ago by ▴ 100
0
votes
0
replies
5.0k
views
Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
6.3 years ago by kousi31 ▴ 100
0
votes
1
reply
5.0k
views
Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
6.3 years ago by kousi31 ▴ 100
81 results • Page 1 of 2
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