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questions
2
votes
5
replies
579
views
Physical Protein size
proteomics
databases
updated 10 weeks ago by
Michael
54k • written 12 weeks ago by
Gabriel
▴ 150
0
votes
1
reply
890
views
Best database for mouse scRNA-seq gene expression data ?
mouse
atlas
updated 2.0 years ago by
Soheil
▴ 110 • written 2.0 years ago by
Gabriel
▴ 150
0
votes
0
replies
304
views
What are Acceptable QC stats for 10x scRNA-seq data?
doublets
scRNAseq
lysate
nUMI
2.1 years ago by
Gabriel
▴ 150
3
votes
2
replies
871
views
What is a suitable metric to compute a cell-to-cell distance matrix
seurat
KNN
scran
SNN
adjacency
2.2 years ago by
Gabriel
▴ 150
0
votes
4
replies
1.3k
views
How to Estimate total variance in, and between RNA-seq datasets?
batch
variance
correction
3.0 years ago by
Gabriel
▴ 150
0
votes
5
replies
1.3k
views
Using Statistical enrichment test for groups Principal Component Analysis
PCA
3.1 years ago by
Gabriel
▴ 150
12
votes
8
replies
5.3k
views
Is there a way to visualize log fold changes for Reactome pathways in R?
pathview
RNA-Seq
reactome
bioconductor
updated 3.1 years ago by
bigmawen
▴ 430 • written 5.0 years ago by
Gabriel
▴ 150
1
vote
1
reply
3.4k
views
Cellranger output .bam file does Not contain barcodes ( CB and UB )
cellranger
barcodes
Velocyto
chromium10x
UMI
3.5 years ago by
Gabriel
▴ 150
1
vote
3
replies
1.9k
views
iSEE singlecellexperiment GUI app on shinyapps not working, Troubleshooting
iSEE
shiny
scRNAseq
updated 3.6 years ago by
kevinrue67
▴ 10 • written 3.6 years ago by
Gabriel
▴ 150
3
votes
3
replies
1.9k
views
Is there a package for ORA where I can supply my own gmt files?
GO
ORA
geneset
bioconductor
gmt files
updated 3.8 years ago by
Florian
▴ 20 • written 4.2 years ago by
Gabriel
▴ 150
1
vote
6
replies
1.5k
views
What causes strange oscillations in the count distribution of Salmon and STAR aligned gene tables?
salmon
STAR
counts
filtering
HTSeq
4.1 years ago by
Gabriel
▴ 150
0
votes
0
replies
2.0k
views
Finding the official list of genes from Geneontology(GO) gene sets
GO
genesets
annotation
RNA-Seq
updated 4.7 years ago by
Biostar
20 • written 4.8 years ago by
Gabriel
▴ 150
0
votes
1
reply
936
views
How to get wikipathways without disease and cancer ontologies?
wikipathways
RNA-Seq
GSEA
gene ontology
5.0 years ago by
Gabriel
▴ 150
22
votes
2
replies
18k
views
What is the best way to rank genes for GSEA?
GSEA
GO
Gene ranking
RNA-Seq
updated 21 months ago by
hermidalc
▴ 60 • written 5.0 years ago by
Gabriel
▴ 150
3
votes
5
replies
1.7k
views
What causes Linear relations on MAplots?
maplot
RNA-Seq
logfold change
5.1 years ago by
Gabriel
▴ 150
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