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589
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Comment: Comment: How to normalize and batch correct SC RNA-seq data from multiple libraries and c
4 months ago by rebeliscu ▴ 30
0
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3
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589
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How to normalize and batch correct SC RNA-seq data from multiple libraries and confounded with biological differences
batch RNA-seq normalization preprocessing single-cell
updated 3 months ago by ★ 2.1k • written 4 months ago by ▴ 30
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0
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336
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Comment: Comment: Ensembl variant consequences and classification info in table format
7 months ago by rebeliscu ▴ 30
0
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2
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336
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Ensembl variant consequences and classification info in table format
SO Ensembl API
7 months ago by rebeliscu ▴ 30
0
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0
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219
views
VEP: "Given ref" field is empty when a ref. allele was in VCF input
WXS VCF VEP
8 months ago by rebeliscu ▴ 30
1
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0
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279
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Qualimap whole exome sequencing depth of coverage - use whole genome or exome as reference?
coverage wxs qualimap depth
8 months ago by rebeliscu ▴ 30
1
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0
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1.1k
views
Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
8 months ago by rebeliscu ▴ 30
0
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1
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1.1k
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Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
8 months ago by rebeliscu ▴ 30
4
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7
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1.1k
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Base recalibration in normal vs. tumor somatic variant calling in WXS data?
WXS recalibration variant somatic
8 months ago by rebeliscu ▴ 30
0
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0
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1.1k
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Comment: Comment: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
8 months ago by rebeliscu ▴ 30
0
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1
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376
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Comment: Comment: Exome sequencing one sample on two lanes considered two read groups for marking
8 months ago by rebeliscu ▴ 30
0
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3
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376
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Exome sequencing one sample on two lanes considered two read groups for marking of PCR duplicates?
deduplication read groups exome sequencing
updated 8 months ago by 117k • written 8 months ago by ▴ 30
0
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0
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811
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Comment: Comment: BBDuk quality filtering not producing expected results
8 months ago by rebeliscu ▴ 30
0
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1
reply
811
views
Comment: Comment: BBDuk quality filtering not producing expected results
8 months ago by rebeliscu ▴ 30
0
votes
1
reply
811
views
Comment: Comment: BBDuk quality filtering not producing expected results
8 months ago by rebeliscu ▴ 30
2
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8
replies
811
views
BBDuk quality filtering not producing expected results
filtering trimming QC BBDuk quality
updated 8 months ago by 34k • written 8 months ago by ▴ 30
0
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1
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811
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Comment: Comment: BBDuk quality filtering not producing expected results
8 months ago by rebeliscu ▴ 30
0
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0
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200
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TCGA Agilent level 2 to level 3
TCGA
10 months ago by rebeliscu ▴ 30
0
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0
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570
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Comment: Comment: GDC RNA-seq pipeline: Original vs. Dr15plus?
10 months ago by rebeliscu ▴ 30
2
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3
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570
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GDC RNA-seq pipeline: Original vs. Dr15plus?
RNA-seq GDC
updated 10 months ago by ▴ 540 • written 10 months ago by ▴ 30
0
votes
1
reply
49k
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Comment: Comment: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
13 months ago by rebeliscu ▴ 30
0
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0
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286
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Where to find TCGA hg38 WXS coverage per sample
TCGA WXS coverage
13 months ago by rebeliscu ▴ 30
1
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2
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1.1k
views
fastq.gz unexpected end of file: Can this be fixed?
corrup fastq
updated 13 months ago by 117k • written 13 months ago by ▴ 30
1
vote
2
replies
797
views
Where to install latest Affymetrix Power Tools?
affymetrix
updated 14 months ago by 117k • written 14 months ago by ▴ 30
0
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0
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870
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Comment: C: RNA-seq data: Contradictory counts vs. variance/dispersion trend?
22 months ago by rebeliscu ▴ 30
1
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2
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870
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RNA-seq data: Contradictory counts vs. variance/dispersion trend?
RNA-Seq rna-seq
updated 22 months ago by 82k • written 22 months ago by ▴ 30
0
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1
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1.5k
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Comment: A: Small dispersion values in differential expression analysis
22 months ago by rebeliscu ▴ 30
0
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0
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747
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"Manual" enrichment analysis of gene set for genes associated with cell types
RNA-Seq deseq2 gene enrichment analysis gsea
3.3 years ago by rebeliscu ▴ 30
0
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0
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2.8k
views
Comment: C: WGCNA for less than 15 samples
3.4 years ago by rebeliscu ▴ 30
29 results • Page 1 of 1
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