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0
votes
0
replies
819
views
Comment:
Comment: should remove unassigned genera in 16S rRNA sequencing analysis
15 months ago by
zhangdengwei
▴ 210
0
votes
2
replies
819
views
should remove unassigned genera in 16S rRNA sequencing analysis
16S
rRNA
metagenomics
sequencing
15 months ago by
zhangdengwei
▴ 210
1
vote
0
replies
448
views
Alternative approach to rarefying in 16S rRNA analysis
16S
Rarefying
rRNA
17 months ago by
zhangdengwei
▴ 210
0
votes
0
replies
985
views
Comment:
Comment: too many zeros in 16S rRNA amplicon sequencing data
17 months ago by
zhangdengwei
▴ 210
0
votes
2
replies
985
views
too many zeros in 16S rRNA amplicon sequencing data
16S
rRNA
17 months ago by
zhangdengwei
▴ 210
0
votes
0
replies
419
views
Align shotgun metagenomics to reference protein database
reference
protein
metagenome
database
paladin
18 months ago by
zhangdengwei
▴ 210
0
votes
0
replies
784
views
Comment:
Comment: how to iteratively search sequences against sequence database using profile HMM
20 months ago by
zhangdengwei
▴ 210
1
vote
2
replies
784
views
how to iteratively search sequences against sequence database using profile HMM
protein
pHMM
20 months ago by
zhangdengwei
▴ 210
0
votes
0
replies
886
views
Comment:
Comment: how to evaluate a small increase in AUC
2.4 years ago by
zhangdengwei
▴ 210
1
vote
2
replies
886
views
how to evaluate a small increase in AUC
learning
AUC
machine
2.4 years ago by
zhangdengwei
▴ 210
3
votes
4
replies
2.6k
views
a problem while using fastq-dump to split SRR files
software error
updated 2.8 years ago by
marcus.hoy.hansen
▴ 10 • written 5.6 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
720
views
got error "need larger value of 'ncol' as pivoting occurred" when using adonis2
PERMANOVA
adonis2
2.9 years ago by
zhangdengwei
▴ 210
0
votes
2
replies
856
views
easy way to fetch out the surrounding CDS of a pair of given coordinates
GFF
3.1 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
856
views
Comment:
Comment: easy way to fetch out the surrounding CDS of a pair of given coordinates
3.1 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
829
views
Comment:
Comment: fetch out common/conserved genes from a bunch of bacteria species
3.2 years ago by
zhangdengwei
▴ 210
0
votes
2
replies
829
views
fetch out common/conserved genes from a bunch of bacteria species
common
analysis
genes
comparative
3.2 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
408
views
how to assign novel multilocus sequence type
microbioloy
3.4 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
1.5k
views
Answer:
Answer: How to obtain compile core gene sequences from Roary?
3.5 years ago by
zhangdengwei
▴ 210
0
votes
5
replies
2.1k
views
few genes were annotated to GO terms using online eggnog-mapper
GO
KEGG
eggnog-mapper
updated 3.6 years ago by
Biostar
20 • written 3.8 years ago by
zhangdengwei
▴ 210
0
votes
1
reply
2.1k
views
Comment:
C: few genes were annotated to GO terms using online eggnog-mapper
3.8 years ago by
zhangdengwei
▴ 210
0
votes
1
reply
10k
views
Is it normal that nearly all of p-value is equal to 0.1 in PERMANOVA analysis
PERMANOVA
statistics
metagenomics
updated 3.9 years ago by
dqq102829
• 0 • written 4.8 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
831
views
how to do the parametric trend analysis in R
trend analysis
parametric
R
3.9 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
1.1k
views
Comment:
C: error when running Mauve to re-order contigs
4.0 years ago by
zhangdengwei
▴ 210
0
votes
2
replies
1.1k
views
error when running Mauve to re-order contigs
comparative genome
Mauve
genome assembly
updated 4.0 years ago by
luusehnal
• 0 • written 4.4 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
905
views
how to select reference when constructing a SNP-based phylogenetic tree
phylogenetic tree
SNP
4.1 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
795
views
predict plasmid from bacterial WGS
WGS
bacteria
plasmid
chromosome
4.1 years ago by
zhangdengwei
▴ 210
0
votes
1
reply
866
views
how to trust the taxa profile annotated by different softwares
metagenome
taxa annotation
metaphlan3
kraken2
4.1 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
1.5k
views
how to get the log file of pip in Conda
pip
Conda
4.1 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
6.8k
views
Comment:
A: how to get the installation history of conda
4.2 years ago by
zhangdengwei
▴ 210
0
votes
4
replies
6.8k
views
how to get the installation history of conda
conda
4.2 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
6.8k
views
Comment:
C: how to get the installation history of conda
4.2 years ago by
zhangdengwei
▴ 210
0
votes
1
reply
1.4k
views
Comment:
C: what's the best Kmer should be set when assembling bacteria genome
4.2 years ago by
zhangdengwei
▴ 210
3
votes
4
replies
1.4k
views
what's the best Kmer should be set when assembling bacteria genome
genome assembly
Kmer
4.2 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
1.2k
views
how to obtain the abundance of superclass pathway of MetaCyc when using humann2 to do function analysis
humann2
MetaCyc
pathway
4.2 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
625
views
compare the plamids of two bacteria
comparative genome
plamids
bateria
4.2 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
2.6k
views
Comment:
C: How to determine contig taxonomy from metagenome?
4.2 years ago by
zhangdengwei
▴ 210
1
vote
0
replies
4.3k
views
Answer:
A: How to change the size of the nodes in Cytoscape according to their relative abu
4.2 years ago by
zhangdengwei
▴ 210
3
votes
1
reply
2.6k
views
Answer:
A: How to determine contig taxonomy from metagenome?
4.2 years ago by
zhangdengwei
▴ 210
0
votes
2
replies
2.5k
views
Comment:
C: what's meaning of parameter "-t rel_ab_w_read_stats"
4.3 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
1.7k
views
Comment:
C: how to annotate draft genome
4.3 years ago by
zhangdengwei
▴ 210
2
votes
6
replies
1.7k
views
how to annotate draft genome
contigs
bacteria
draft genome
updated 4.3 years ago by
andres.firrincieli
3.8k • written 4.3 years ago by
zhangdengwei
▴ 210
0
votes
1
reply
1.7k
views
Comment:
C: how to annotate draft genome
4.3 years ago by
zhangdengwei
▴ 210
0
votes
1
reply
2.0k
views
Comment:
C: bootstraped spearman correlation in R
4.3 years ago by
zhangdengwei
▴ 210
3
votes
3
replies
2.0k
views
bootstraped spearman correlation in R
spearman correlation
bootstraped
spearmanRho
updated 4.3 years ago by
h.mon
35k • written 4.3 years ago by
zhangdengwei
▴ 210
0
votes
2
replies
1.4k
views
Significantly different number of reads between two paired files when runing kneaddata
kneaddata
metagenomics
remove host reads
updated 4.3 years ago by
Biostar
20 • written 4.5 years ago by
zhangdengwei
▴ 210
0
votes
1
reply
8.0k
views
Comment:
C: meaning of CheckM output
4.3 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
8.0k
views
Comment:
C: meaning of CheckM output
4.3 years ago by
zhangdengwei
▴ 210
2
votes
4
replies
8.0k
views
meaning of CheckM output
genome assembly
CheckM
Contigs
updated 4.3 years ago by
Asaf
10k • written 4.3 years ago by
zhangdengwei
▴ 210
0
votes
0
replies
2.1k
views
Comment:
C: which better for the prediction of 16s rRNA
4.4 years ago by
zhangdengwei
▴ 210
5
votes
2
replies
2.1k
views
which better for the prediction of 16s rRNA
16s rRNA
sequence prediction
updated 4.4 years ago by
Mensur Dlakic
★ 28k • written 4.4 years ago by
zhangdengwei
▴ 210
104 results • Page
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