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655
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Comment: Comment: should remove unassigned genera in 16S rRNA sequencing analysis
9 months ago by zhangdengwei ▴ 210
0
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2
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655
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should remove unassigned genera in 16S rRNA sequencing analysis
16S rRNA metagenomics sequencing
9 months ago by zhangdengwei ▴ 210
1
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0
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362
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Alternative approach to rarefying in 16S rRNA analysis
16S Rarefying rRNA
11 months ago by zhangdengwei ▴ 210
0
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0
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794
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Comment: Comment: too many zeros in 16S rRNA amplicon sequencing data
11 months ago by zhangdengwei ▴ 210
0
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2
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794
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too many zeros in 16S rRNA amplicon sequencing data
16S rRNA
11 months ago by zhangdengwei ▴ 210
0
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0
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349
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Align shotgun metagenomics to reference protein database
reference protein metagenome database paladin
12 months ago by zhangdengwei ▴ 210
0
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0
replies
630
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Comment: Comment: how to iteratively search sequences against sequence database using profile HMM
14 months ago by zhangdengwei ▴ 210
1
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2
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630
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how to iteratively search sequences against sequence database using profile HMM
protein pHMM
14 months ago by zhangdengwei ▴ 210
0
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0
replies
703
views
Comment: Comment: how to evaluate a small increase in AUC
23 months ago by zhangdengwei ▴ 210
1
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2
replies
703
views
how to evaluate a small increase in AUC
learning AUC machine
23 months ago by zhangdengwei ▴ 210
3
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4
replies
2.5k
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a problem while using fastq-dump to split SRR files
software error
updated 2.3 years ago by ▴ 10 • written 5.1 years ago by ▴ 210
0
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0
replies
605
views
got error "need larger value of 'ncol' as pivoting occurred" when using adonis2
PERMANOVA adonis2
2.4 years ago by zhangdengwei ▴ 210
0
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2
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752
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easy way to fetch out the surrounding CDS of a pair of given coordinates
GFF
2.6 years ago by zhangdengwei ▴ 210
0
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0
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752
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Comment: Comment: easy way to fetch out the surrounding CDS of a pair of given coordinates
2.6 years ago by zhangdengwei ▴ 210
0
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0
replies
705
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Comment: Comment: fetch out common/conserved genes from a bunch of bacteria species
2.7 years ago by zhangdengwei ▴ 210
0
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2
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705
views
fetch out common/conserved genes from a bunch of bacteria species
common analysis genes comparative
2.7 years ago by zhangdengwei ▴ 210
0
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0
replies
371
views
how to assign novel multilocus sequence type
microbioloy
3.0 years ago by zhangdengwei ▴ 210
0
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0
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1.4k
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Answer: Answer: How to obtain compile core gene sequences from Roary?
3.0 years ago by zhangdengwei ▴ 210
0
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5
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1.9k
views
few genes were annotated to GO terms using online eggnog-mapper
GO KEGG eggnog-mapper
updated 3.2 years ago by 20 • written 3.3 years ago by ▴ 210
0
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1
reply
1.9k
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Comment: C: few genes were annotated to GO terms using online eggnog-mapper
3.3 years ago by zhangdengwei ▴ 210
0
votes
1
reply
10k
views
Is it normal that nearly all of p-value is equal to 0.1 in PERMANOVA analysis
PERMANOVA statistics metagenomics
updated 3.4 years ago by • 0 • written 4.3 years ago by ▴ 210
0
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0
replies
772
views
how to do the parametric trend analysis in R
trend analysis parametric R
3.4 years ago by zhangdengwei ▴ 210
0
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0
replies
998
views
Comment: C: error when running Mauve to re-order contigs
3.5 years ago by zhangdengwei ▴ 210
0
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2
replies
998
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error when running Mauve to re-order contigs
comparative genome Mauve genome assembly
updated 3.5 years ago by • 0 • written 3.9 years ago by ▴ 210
0
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0
replies
850
views
how to select reference when constructing a SNP-based phylogenetic tree
phylogenetic tree SNP
3.6 years ago by zhangdengwei ▴ 210
0
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0
replies
733
views
predict plasmid from bacterial WGS
WGS bacteria plasmid chromosome
3.6 years ago by zhangdengwei ▴ 210
0
votes
1
reply
776
views
how to trust the taxa profile annotated by different softwares
metagenome taxa annotation metaphlan3 kraken2
3.6 years ago by zhangdengwei ▴ 210
0
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0
replies
1.4k
views
how to get the log file of pip in Conda
pip Conda
3.7 years ago by zhangdengwei ▴ 210
0
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0
replies
5.9k
views
Comment: A: how to get the installation history of conda
3.7 years ago by zhangdengwei ▴ 210
0
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4
replies
5.9k
views
how to get the installation history of conda
conda
3.7 years ago by zhangdengwei ▴ 210
0
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0
replies
5.9k
views
Comment: C: how to get the installation history of conda
3.7 years ago by zhangdengwei ▴ 210
0
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1
reply
1.3k
views
Comment: C: what's the best Kmer should be set when assembling bacteria genome
3.7 years ago by zhangdengwei ▴ 210
3
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4
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1.3k
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what's the best Kmer should be set when assembling bacteria genome
genome assembly Kmer
3.7 years ago by zhangdengwei ▴ 210
0
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0
replies
1.1k
views
how to obtain the abundance of superclass pathway of MetaCyc when using humann2 to do function analysis
humann2 MetaCyc pathway
3.7 years ago by zhangdengwei ▴ 210
0
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0
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559
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compare the plamids of two bacteria
comparative genome plamids bateria
3.7 years ago by zhangdengwei ▴ 210
0
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0
replies
2.3k
views
Comment: C: How to determine contig taxonomy from metagenome?
3.7 years ago by zhangdengwei ▴ 210
1
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0
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4.1k
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Answer: A: How to change the size of the nodes in Cytoscape according to their relative abu
3.7 years ago by zhangdengwei ▴ 210
3
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1
reply
2.3k
views
Answer: A: How to determine contig taxonomy from metagenome?
3.7 years ago by zhangdengwei ▴ 210
0
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2
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2.2k
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Comment: C: what's meaning of parameter "-t rel_ab_w_read_stats"
3.8 years ago by zhangdengwei ▴ 210
0
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0
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1.5k
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Comment: C: how to annotate draft genome
3.8 years ago by zhangdengwei ▴ 210
2
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6
replies
1.5k
views
how to annotate draft genome
contigs bacteria draft genome
updated 3.8 years ago by 3.6k • written 3.8 years ago by ▴ 210
0
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1
reply
1.5k
views
Comment: C: how to annotate draft genome
3.8 years ago by zhangdengwei ▴ 210
0
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1
reply
1.8k
views
Comment: C: bootstraped spearman correlation in R
3.8 years ago by zhangdengwei ▴ 210
3
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3
replies
1.8k
views
bootstraped spearman correlation in R
spearman correlation bootstraped spearmanRho
updated 3.8 years ago by 35k • written 3.8 years ago by ▴ 210
0
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2
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1.3k
views
Significantly different number of reads between two paired files when runing kneaddata
kneaddata metagenomics remove host reads
updated 3.8 years ago by 20 • written 4.0 years ago by ▴ 210
0
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1
reply
7.0k
views
Comment: C: meaning of CheckM output
3.8 years ago by zhangdengwei ▴ 210
0
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0
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7.0k
views
Comment: C: meaning of CheckM output
3.8 years ago by zhangdengwei ▴ 210
2
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4
replies
7.0k
views
meaning of CheckM output
genome assembly CheckM Contigs
updated 3.8 years ago by 10k • written 3.8 years ago by ▴ 210
0
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0
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1.8k
views
Comment: C: which better for the prediction of 16s rRNA
3.9 years ago by zhangdengwei ▴ 210
5
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2
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1.8k
views
which better for the prediction of 16s rRNA
16s rRNA sequence prediction
updated 3.9 years ago by ★ 27k • written 3.9 years ago by ▴ 210
104 results • Page 1 of 3
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