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17
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8
replies
35k
views
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How to read vcf file in python?
vcf reader python
updated 14 months ago by ▴ 90 • written 4.3 years ago by ▴ 20
2
votes
5
replies
1.1k
views
How to convert fastq to BAM
fastq bam
updated 23 months ago by ★ 3.8k • written 23 months ago by ▴ 20
4
votes
7
replies
1.0k
views
CNV - Copy number variations. Which tool is most used for?
number variations CNV Copy
updated 2.1 years ago by 87k • written 2.1 years ago by ▴ 20
8
votes
2
replies
3.0k
views
Bowtie2 and Hisat2 which tool should I use?
alignment Bowtie2 Hisat2
2.1 years ago by ja4123 ▴ 20
4
votes
7
replies
944
views
Trimmomatic usage based on input data
Trimmomatic filtering
updated 2.1 years ago by 142k • written 2.1 years ago by ▴ 20
6
votes
4
replies
863
views
Can someone could recommend some article (code and files included) related to alcoholic disease on any grounds?
alcoholic tumor
updated 2.1 years ago by ★ 27k • written 2.1 years ago by ▴ 20
1
vote
2
replies
982
views
How to calculate LogFC? [gene expression matrix]?
gene expression LogFC
updated 2.2 years ago by 82k • written 2.2 years ago by ▴ 20
7
votes
14
replies
2.4k
views
How to count gene expression level in R?
expression seurat r gene bioconductor
2.7 years ago by ja4123 ▴ 20
4
votes
2
replies
1.1k
views
scRNA-seq data analysis - R
scRNA-seq R
updated 2.7 years ago by 82k • written 2.7 years ago by ▴ 20
0
votes
3
replies
838
views
Snakefile - problem with too many outputs
snakemake snakefile
updated 2.9 years ago by ★ 1.4k • written 2.9 years ago by ▴ 20
0
votes
0
replies
564
views
Flexibility of protein (ProtParam module from biopython)
biopython Flexibility
2.9 years ago by ja4123 ▴ 20
2
votes
6
replies
2.1k
views
How to extract information about which chromosome it is, from bam file using pysam?
pysam bam
updated 2.9 years ago by 21k • written 2.9 years ago by ▴ 20
3
votes
7
replies
1.4k
views
How to download via biopython (proteom or genome) individual or random organisms?
genom proteom
updated 3.0 years ago by 142k • written 3.1 years ago by ▴ 20
5
votes
7
replies
1.3k
views
bedtools intersect usage problem
bedtools intersect bam
updated 3.3 years ago by 19k • written 3.3 years ago by ▴ 20
1
vote
1
reply
1.2k
views
Files for CHIPseeker analysis
chipseeker chip-seq r
3.3 years ago by ja4123 ▴ 20
1
vote
1
reply
750
views
Location of the peaks from CHIP-seq data in the genome
CHIP-seq macs3 bed narrowPeak
3.3 years ago by ja4123 ▴ 20
7
votes
1
reply
4.7k
views
How to convert vcf.bgz to vcf.gz?
vcf gz bgz gnomad
updated 3.5 years ago by 20 • written 4.3 years ago by ▴ 20
2
votes
8
replies
1.4k
views
Problem succesfully running freebayes
freebayes vcf fasta
4.3 years ago by ja4123 ▴ 20
3
votes
1
reply
3.1k
views
File not suitable for fasta index generation.
fasta index freebayes
updated 4.3 years ago by 161k • written 4.3 years ago by ▴ 20
4
votes
5
replies
3.0k
views
Unable to find FASTA index entry for '1'
freebayes fasta vcf bam
4.3 years ago by ja4123 ▴ 20
1
vote
9
replies
5.7k
views
HISAT2 Error: Encountered internal HISAT2 exception (#1)
hisat2
4.3 years ago by ja4123 ▴ 20
1
vote
1
reply
5.2k
views
How to read vcf.bgz or vcf.gz in python using PyVcf?
pyvcf vcf python
updated 4.4 years ago by 14k • written 4.4 years ago by ▴ 20
0
votes
2
replies
2.3k
views
Require Genotypes In Vcf File In Order To Output Frequency Statistics
vcf vcftools AF allele frequency
4.4 years ago by ja4123 ▴ 20
0
votes
2
replies
867
views
How to load bed graph in a numpy vector
sequence gene
updated 5.0 years ago by 47k • written 5.0 years ago by ▴ 20
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