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0
votes
0
replies
267
views
Bcftools consensus when reference is a deletion
consensus vcf
5 months ago by selplat21 ▴ 20
0
votes
0
replies
266
views
Bcftools Consensus - Choose Random Allele for Heterozygous Sites
bcftools
updated 6 months ago by 43k • written 6 months ago by ▴ 20
0
votes
0
replies
340
views
Sample based on allele frequency matching between two files
linkage
updated 11 months ago by 43k • written 11 months ago by ▴ 20
3
votes
2
replies
609
views
Removing or Setting pairs to NA based on conditions in another data frame (R)
R
21 months ago by selplat21 ▴ 20
2
votes
2
replies
753
views
Set random genotypes to missing in VCF file by individuals and sites
imputation
21 months ago by selplat21 ▴ 20
1
vote
5
replies
1.0k
views
Convert rows to columns delimited by each SNP ID
vcf linux bimbam
updated 21 months ago by 141k • written 21 months ago by ▴ 20
1
vote
2
replies
561
views
Extract Reads with Allele Type in IGV
Genomics alignment
updated 16 months ago by 43k • written 2.2 years ago by ▴ 20
1
vote
3
replies
749
views
Add Chromosome Breaks and Labels to Continuous x-axis in R
R
updated 2.2 years ago by 11k • written 2.2 years ago by ▴ 20
2
votes
1
reply
528
views
Filter VCF file by list of sites.
vcf filtering genomics
updated 2.3 years ago by 161k • written 2.3 years ago by ▴ 20
0
votes
3
replies
742
views
Loop for interval range based on chromosome sizes
chromosomes genomics
updated 14 months ago by 43k • written 2.3 years ago by ▴ 20
0
votes
0
replies
587
views
Modifying Genbank Contamination File for Bedtools
Genome-Assembly Linux
updated 2.7 years ago by 43k • written 2.8 years ago by ▴ 20
1
vote
1
reply
588
views
For loop to generate mean for each measurement by sex
R
updated 13 months ago by 43k • written 3.4 years ago by ▴ 20
1
vote
6
replies
870
views
Linear Model Loop in R
R
updated 11 months ago by 43k • written 3.5 years ago by ▴ 20
1
vote
1
reply
733
views
Imputation on low coverage samples
next-gen popgen imputation sequencing
3.5 years ago by selplat21 ▴ 20
1
vote
3
replies
832
views
Summing Chromosome Sizes
R sequencing
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 20
0
votes
0
replies
1.2k
views
RepeatModeler - Everything works except LTR Harvest
assembly genome next-gen sequencing
3.5 years ago by selplat21 ▴ 20
0
votes
5
replies
850
views
Making disjoint chromosomal sites contiguous with awk
awk assembly bash sequence
updated 11 months ago by 43k • written 3.5 years ago by ▴ 20
0
votes
9
replies
2.1k
views
Concatenation and Gzip Compression of Beagle Files Slow
sequencing next-gen unix bash
updated 3.7 years ago by 20 • written 3.7 years ago by ▴ 20
1
vote
6
replies
1.1k
views
Print based on character strings
R Command Line Unix
3.7 years ago by selplat21 ▴ 20
5
votes
7
replies
1.4k
views
For Loop to make new dataframe
R Excel
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 20
1
vote
2
replies
849
views
Significance testing on regression with binned data
R
3.8 years ago by selplat21 ▴ 20
2
votes
9
replies
986
views
Difference in means between sexes over time
R
3.8 years ago by selplat21 ▴ 20
1
vote
9
replies
1.1k
views
Boxplots and Time Series Data
R
4.0 years ago by selplat21 ▴ 20
1
vote
6
replies
756
views
Plotting time against quantitative variables in R
R time-series ecology
updated 4.2 years ago by 10k • written 4.2 years ago by ▴ 20
0
votes
3
replies
1.1k
views
How do I summarize coverage across many genomes to inform filtering cutoffs?
alignment coverage samtools genome next-gen
updated 4.3 years ago by ▴ 330 • written 4.3 years ago by ▴ 20
3
votes
3
replies
804
views
Remove and Substitute Fasta Header
fasta alignment
4.5 years ago by selplat21 ▴ 20
0
votes
5
replies
2.2k
views
EOF Marker absent .bam.pbi files
sequencing Assembly
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 20
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