Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
1
vote
4
replies
422
views
How can I get the sequences of the first 20nt of introns and the last 250nt of introns of hg38 genome?
annotation RNA
updated 12 weeks ago by 8.6k • written 12 weeks ago by ▴ 140
9
votes
6
replies
845
views
Search a read by its name in a big fastq.gz file
NGS fastq
updated 5 months ago by 43k • written 5 months ago by ▴ 140
2
votes
1
reply
593
views
are transcripts in the Ensembl transcript release of human from certain cell types?
annotation RNA-seq
updated 10 months ago by ▴ 510 • written 10 months ago by ▴ 140
1
vote
2
replies
518
views
multi-mapping reads settings in Rsubread or Rsubjunc
Rsubjunc RNA-seq
12 months ago by xiaoleiusc ▴ 140
1
vote
5
replies
1.5k
views
Find a human mRNA transcript with specific dinucleotide frequencies close to user input values
Python RNA-seq R
updated 15 months ago by 43k • written 2.5 years ago by ▴ 140
2
votes
6
replies
1.6k
views
calculate nucleotides frequencies from mapped reads in a BAM file
RNA-seq
updated 2.6 years ago by 8.7k • written 2.6 years ago by ▴ 140
1
vote
0
replies
584
views
Is there a public database where I could download mRNA seq (transcriptome) data of 293T cells
RNA-seq Database Public
2.6 years ago by xiaoleiusc ▴ 140
1
vote
1
reply
675
views
BSgenomes for HIV viruses
CLIP-seq RNA-Seq CLIP-Seq
updated 2.7 years ago by 82k • written 2.7 years ago by ▴ 140
2
votes
2
replies
1.1k
views
tools for calculating nucleotide composition of a gene
NGS
3.0 years ago by xiaoleiusc ▴ 140
2
votes
6
replies
3.4k
views
convert DNA FASTA file to RNA FASTA file
RNA-Seq ChIP-Seq sequence
updated 3.2 years ago by 13k • written 3.2 years ago by ▴ 140
2
votes
2
replies
753
views
R error: could not find function "makeTxDbFromUCSC"
R RNA-Seq
3.3 years ago by xiaoleiusc ▴ 140
0
votes
2
replies
1.1k
views
HIV NL4-3 transcriptome fasta
rna-seq CLIP-seq
updated 3.3 years ago by • 0 • written 4.1 years ago by ▴ 140
3
votes
6
replies
3.5k
views
Bowtie alignment run too long and not finishing job
RNA-Seq ChIP-Seq
3.7 years ago by xiaoleiusc ▴ 140
0
votes
0
replies
653
views
Motif discovery of RNA binding proteins
CLIP-Seq RNA-Seq
3.7 years ago by xiaoleiusc ▴ 140
5
votes
7
replies
1.3k
views
Collapse mapped reads in sorted bam file based on the start and end position coordinates
rna-seq
updated 3.7 years ago by 142k • written 3.7 years ago by ▴ 140
5
votes
3
replies
810
views
base composition of human genome
genome
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 140
5
votes
7
replies
2.8k
views
IGV viewer could not display genome sequences correctly
RNA-Seq
updated 4.1 years ago by ▴ 300 • written 4.3 years ago by ▴ 140
3
votes
3
replies
1.1k
views
Why bowtie report same number of reads with different - k parameters?
RNA-Seq CLIP-seq
4.1 years ago by xiaoleiusc ▴ 140
2
votes
4
replies
972
views
filter out reads with specific properties from bam file
RNA-Seq CLIP-seq
updated 4.2 years ago by 161k • written 4.2 years ago by ▴ 140
2
votes
10
replies
2.9k
views
How to Check Per Base Sequence Content of a Fasta file
rna-seq
4.3 years ago by xiaoleiusc ▴ 140
0
votes
0
replies
846
views
How to set up quality filter which only applies to the 5' end of reads
RNA-Seq ChIP-Seq CLIP-seq
4.6 years ago by xiaoleiusc ▴ 140
2
votes
1
reply
1.8k
views
Set minimal reads length for Bowtie single-end alignment
RNA-Seq
4.8 years ago by xiaoleiusc ▴ 140
1
vote
1
reply
614
views
fastx_clipper run forever and never finish
RNA-Seq
4.8 years ago by xiaoleiusc ▴ 140
2
votes
8
replies
1.6k
views
PARalyzer error: * is not found in the .2bit file
CLIP-Seq
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 140
24 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6