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2
votes
6
replies
1.8k
views
Extract variants from genomic range from gnomAD GRCh38
gnomad variants genome exome
updated 2.2 years ago by ▴ 50 • written 4.5 years ago by ▴ 30
2
votes
1
reply
991
views
ANNOVAR doesn't recognize multiple variants at single locus
SNPs ANNOVAR snpEff SNVs
updated 3.1 years ago by ▴ 280 • written 3.1 years ago by ▴ 30
0
votes
3
replies
1.3k
views
TrackViewer Change Color of Lollipops in Lolliplot
TrackViewer R
updated 3.3 years ago by • 0 • written 4.0 years ago by ▴ 30
0
votes
1
reply
1.0k
views
Color Mutation Graph with Trackviewer
TrackViewer R Lolliplot
updated 3.8 years ago by ▴ 140 • written 4.0 years ago by ▴ 30
2
votes
2
replies
1.2k
views
snpEff killed while reading genome version
snpEff SNP
updated 3.8 years ago by 20 • written 4.0 years ago by ▴ 30
0
votes
0
replies
690
views
Bulk small RNA self-complementarity tool
RNA mfold
3.8 years ago by j.lunger18 ▴ 30
0
votes
1
reply
1.3k
views
Best tool to merge .vcf files from different variant callers?
VCF GATK annotation variants SNP
updated 3.8 years ago by 20 • written 4.0 years ago by ▴ 30
0
votes
1
reply
1.0k
views
Comment: C: Understanding TCGA somatic mutation files
4.0 years ago by j.lunger18 ▴ 30
0
votes
3
replies
1.0k
views
Understanding TCGA somatic mutation files
TCGA SNPs vcf maf
updated 4.0 years ago by 87k • written 4.0 years ago by ▴ 30
0
votes
0
replies
880
views
Comment: C: bcftools merge single-sample vcf files
4.0 years ago by j.lunger18 ▴ 30
1
vote
2
replies
880
views
bcftools merge single-sample vcf files
bcftools vcf SNP
updated 4.0 years ago by 47k • written 4.0 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Comment: C: gnomAD reports variants with "NA" allele count and allele frequency
4.0 years ago by j.lunger18 ▴ 30
2
votes
3
replies
1.1k
views
gnomAD reports variants with "NA" allele count and allele frequency
gnomAD SNPs vcf
updated 3.0 years ago by ▴ 150 • written 4.0 years ago by ▴ 30
0
votes
1
reply
1.0k
views
Merge vcf files from the four variant callers from TCGA
VCF TCGA SNP
updated 4.0 years ago by 87k • written 4.0 years ago by ▴ 30
0
votes
0
replies
807
views
Reference genome for snpEff
snpEff vcf assembly
4.0 years ago by j.lunger18 ▴ 30
0
votes
0
replies
1.2k
views
Comment: C: snpEff killed while reading genome version
4.0 years ago by j.lunger18 ▴ 30
0
votes
2
replies
1.3k
views
Pipe output from curl to tabix to slice .vcf file
VCF Tabix Curl
updated 4.0 years ago by 20 • written 4.0 years ago by ▴ 30
0
votes
1
reply
3.4k
views
Comment: C: Fix or remove format tag in .vcf file
4.0 years ago by j.lunger18 ▴ 30
0
votes
3
replies
3.4k
views
Fix or remove format tag in .vcf file
vcf bcftools samtools
updated 4.0 years ago by 161k • written 4.0 years ago by ▴ 30
0
votes
1
reply
1.8k
views
Comment: C: Merge vcf files with bcftools
4.0 years ago by j.lunger18 ▴ 30
0
votes
4
replies
1.8k
views
Merge vcf files with bcftools
bcftools samtools
4.0 years ago by j.lunger18 ▴ 30
0
votes
1
reply
1.0k
views
Download non-cancer subset from gnomAD
gnomAD VCF variants mutations SNV
4.0 years ago by j.lunger18 ▴ 30
0
votes
1
reply
953
views
Comment: C: MD5 not the same between contig and reference; both Unified Genotyper and Haplot
4.1 years ago by j.lunger18 ▴ 30
2
votes
4
replies
953
views
MD5 not the same between contig and reference; both Unified Genotyper and Haplotype Caller
GATK VCF MD5
updated 4.1 years ago by 13k • written 4.1 years ago by ▴ 30
0
votes
1
reply
1.6k
views
Comment: C: R Package for Visualizing SNVs from "sites only" VCF (population variants)
4.1 years ago by j.lunger18 ▴ 30
0
votes
1
reply
1.6k
views
Comment: C: R Package for Visualizing SNVs from "sites only" VCF (population variants)
4.1 years ago by j.lunger18 ▴ 30
0
votes
1
reply
1.6k
views
Comment: C: R Package for Visualizing SNVs from "sites only" VCF (population variants)
4.1 years ago by j.lunger18 ▴ 30
0
votes
1
reply
1.6k
views
Comment: C: R Package for Visualizing SNVs from "sites only" VCF (population variants)
4.1 years ago by j.lunger18 ▴ 30
0
votes
7
replies
1.6k
views
R Package for Visualizing SNVs from "sites only" VCF (population variants)
R SNVs VCF
4.1 years ago by j.lunger18 ▴ 30
0
votes
0
replies
965
views
Comment: C: GENCODE and untranslated regions
4.4 years ago by j.lunger18 ▴ 30
3
votes
3
replies
965
views
GENCODE and untranslated regions
GENCODE UTR
updated 4.4 years ago by 23k • written 4.4 years ago by ▴ 30
1
vote
2
replies
1.3k
views
Extracting VCF of all variants in TCGA exomes from all cancer types
tcga vcf
updated 4.4 years ago by 87k • written 4.4 years ago by ▴ 30
1
vote
2
replies
1.3k
views
Add error bars to barplot that uses melted dataframe in R
R ggplot2 qPCR ddCT
4.4 years ago by j.lunger18 ▴ 30
0
votes
2
replies
2.8k
views
extracting info field from VCF using vcfr
R vcf vcfr annotation genome
updated 4.5 years ago by 20 • written 4.5 years ago by ▴ 30
0
votes
1
reply
1.8k
views
Comment: C: Extract variants from genomic range from gnomAD GRCh38
4.5 years ago by j.lunger18 ▴ 30
1
vote
2
replies
3.1k
views
select() not working in R
R
updated 4.5 years ago by 3.2k • written 4.5 years ago by ▴ 30
1
vote
2
replies
1.3k
views
Using joiningdata/lollipops to make lollipop chart
annotation mutation genome lollipop
updated 2.7 years ago by ▴ 20 • written 4.5 years ago by ▴ 30
0
votes
2
replies
811
views
New Column based on another data frame
r domains genome
updated 4.5 years ago by ★ 3.8k • written 4.5 years ago by ▴ 30
1
vote
1
reply
1.2k
views
problem using UniprotR's " GetFamily_Domains() "
r uniprot protein domains functional domains
4.5 years ago by j.lunger18 ▴ 30
0
votes
0
replies
2.8k
views
Comment: C: extracting info field from VCF using vcfr
4.5 years ago by j.lunger18 ▴ 30
1
vote
4
replies
2.8k
views
Import VCF from GnomAD
vcf gnomad path
updated 2.6 years ago by • 0 • written 4.6 years ago by ▴ 30
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