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3.2k
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Comment: Comment: Extract CDS from maker gff
2.1 years ago by mrmrwinter ▴ 30
0
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0
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706
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Comment: Comment: Indel size seemingly capped by software?
2.8 years ago by mrmrwinter ▴ 30
0
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1
reply
706
views
Indel size seemingly capped by software?
indels calling nucmer variant genome alignment
2.8 years ago by mrmrwinter ▴ 30
0
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1
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2.5k
views
Comment: Comment: Keep lines that dont match awk pattern, edit those that do
3.1 years ago by mrmrwinter ▴ 30
3
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7
replies
2.5k
views
Keep lines that dont match awk pattern, edit those that do
bash awk sed
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 30
0
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1
reply
2.5k
views
Comment: Comment: Keep lines that dont match awk pattern, edit those that do
3.1 years ago by mrmrwinter ▴ 30
0
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0
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2.1k
views
Comment: Comment: Continuing issues with MAKER and SNAP
3.1 years ago by mrmrwinter ▴ 30
0
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0
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2.3k
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Comment: Comment: Error when trying to convert exonerate output to gff3
3.1 years ago by mrmrwinter ▴ 30
0
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0
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2.1k
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Comment: Comment: Continuing issues with MAKER and SNAP
3.1 years ago by mrmrwinter ▴ 30
0
votes
0
replies
542
views
linking exons and introns when plotting from genbank file?
exons genbank plotting dna_features_viewer introns
3.1 years ago by mrmrwinter ▴ 30
0
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0
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1.8k
views
Comment: Comment: Non-standard Genbank format
3.1 years ago by mrmrwinter ▴ 30
0
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1
reply
2.1k
views
Comment: Comment: Continuing issues with MAKER and SNAP
3.1 years ago by mrmrwinter ▴ 30
2
votes
6
replies
2.1k
views
Continuing issues with MAKER and SNAP
SNAP zff gff MAKER annotation
3.1 years ago by mrmrwinter ▴ 30
0
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0
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1.8k
views
Comment: Comment: Non-standard Genbank format
3.1 years ago by mrmrwinter ▴ 30
0
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0
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2.7k
views
Answer: Answer: maker2zff error on run
3.2 years ago by mrmrwinter ▴ 30
0
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2
replies
1.8k
views
Comment: Comment: Non-standard Genbank format
3.2 years ago by mrmrwinter ▴ 30
0
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6
replies
1.8k
views
Non-standard Genbank format
biopython ugene genbank
3.1 years ago by mrmrwinter ▴ 30
1
vote
1
reply
1.7k
views
Colour tip labels in a tree based on wildcard/expression using ggtree
ggtree colour R phylogeny dendrogram
updated 4.1 years ago by 45k • written 4.1 years ago by ▴ 30
11
votes
11
replies
6.2k
views
8 follow
Forum: Best open source genome browser in 2020
genome-browser genomics
updated 2.1 years ago by 45k • written 4.4 years ago by ▴ 30
0
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0
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3.1k
views
Comment: C: Combining nanopore libraries
4.4 years ago by mrmrwinter ▴ 30
2
votes
4
replies
3.1k
views
Combining nanopore libraries
promethion nanopore Assembly
3.2 years ago by mrmrwinter ▴ 30
1
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0
replies
6.2k
views
Comment: Comment: Best open source genome browser in 2020
3.3 years ago by mrmrwinter ▴ 30
0
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0
replies
1.1k
views
Which ete3 format to parse a newick file with concordance values?
iqtree phylogenetics concordance factors newick
4.7 years ago by mrmrwinter ▴ 30
0
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1
reply
1.0k
views
Allow for failed wildcards in Snakemake workflow
snakemake python wildcards
4.8 years ago by mrmrwinter ▴ 30
0
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1
reply
1.4k
views
Comment: C: Order assignment given family and genus level in R
4.9 years ago by mrmrwinter ▴ 30
1
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4
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1.4k
views
Order assignment given family and genus level in R
r taxomonic assignment transformation
4.9 years ago by mrmrwinter ▴ 30
0
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0
replies
4.2k
views
Comment: C: Less and less genes predicted with each iteration of SNAP/MAKER
5.1 years ago by mrmrwinter ▴ 30
0
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1
reply
4.2k
views
Comment: C: Less and less genes predicted with each iteration of SNAP/MAKER
5.1 years ago by mrmrwinter ▴ 30
3
votes
15
replies
4.2k
views
Less and less genes predicted with each iteration of SNAP/MAKER
maker annotation snap gene prediction genomics
updated 3.6 years ago by ▴ 30 • written 5.1 years ago by ▴ 30
0
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0
replies
4.3k
views
Comment: C: If loop in snakemake
5.1 years ago by mrmrwinter ▴ 30
0
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0
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4.3k
views
Comment: C: If loop in snakemake
5.1 years ago by mrmrwinter ▴ 30
0
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1
reply
4.3k
views
Comment: C: If loop in snakemake
5.1 years ago by mrmrwinter ▴ 30
0
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0
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4.3k
views
Comment: C: If loop in snakemake
5.1 years ago by mrmrwinter ▴ 30
3
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9
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4.3k
views
If loop in snakemake
shell snakemake if else loop
5.1 years ago by mrmrwinter ▴ 30
0
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0
replies
2.6k
views
Comment: C: Counting CDS's in Maker output
5.2 years ago by mrmrwinter ▴ 30
0
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0
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2.6k
views
Comment: C: Counting CDS's in Maker output
5.2 years ago by mrmrwinter ▴ 30
0
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2
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2.6k
views
Comment: C: Counting CDS's in Maker output
5.2 years ago by mrmrwinter ▴ 30
0
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0
replies
1.0k
views
Answer: A: I want to assembly all the reads at ones in linux
5.2 years ago by mrmrwinter ▴ 30
0
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1
reply
2.6k
views
Comment: C: Counting CDS's in Maker output
5.2 years ago by mrmrwinter ▴ 30
0
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1
reply
2.6k
views
Comment: C: Counting CDS's in Maker output
5.2 years ago by mrmrwinter ▴ 30
0
votes
1
reply
2.6k
views
Comment: C: Counting CDS's in Maker output
5.2 years ago by mrmrwinter ▴ 30
5
votes
11
replies
2.6k
views
Counting CDS's in Maker output
annotation maker cds est gene prediction
updated 5.2 years ago by 9.2k • written 5.2 years ago by ▴ 30
0
votes
1
reply
946
views
Comment: C: If/Else loop for grep count
5.2 years ago by mrmrwinter ▴ 30
1
vote
4
replies
946
views
If/Else loop for grep count
grep if else python snakemake
updated 5.2 years ago by 166k • written 5.2 years ago by ▴ 30
3
votes
2
replies
1.1k
views
Which format to download ESTs for annotation with MAKER?
genome annotation gene prediction
updated 5.2 years ago by 9.2k • written 5.2 years ago by ▴ 30
0
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0
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768
views
Comment: C: How to omit certain results from GenBank search?
5.2 years ago by mrmrwinter ▴ 30
1
vote
2
replies
768
views
How to omit certain results from GenBank search?
genbank omission annotation protein database
5.2 years ago by mrmrwinter ▴ 30
3
votes
2
replies
2.7k
views
Error: NCBI C++ Exception - Invalid choice selection: NCBI-Seqalign::Score.value.real
blast ncbi terminal software error seqalign
updated 3.6 years ago by • 0 • written 5.6 years ago by ▴ 30
0
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0
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11k
views
Comment: C: remote blast requires installation of taxdb database
5.6 years ago by mrmrwinter ▴ 30
0
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0
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2.9k
views
Comment: C: NCBI blastp fails with "Invalid choice selection: NCBI-Seqalign::Score.value.rea
5.6 years ago by mrmrwinter ▴ 30
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