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Indel size seemingly capped by software?
indels calling nucmer variant genome alignment
22 months ago by mrmrwinter ▴ 30
3
votes
7
replies
1.3k
views
Keep lines that dont match awk pattern, edit those that do
bash awk sed
updated 2.1 years ago by 21k • written 2.1 years ago by ▴ 30
0
votes
0
replies
341
views
linking exons and introns when plotting from genbank file?
exons genbank plotting dna_features_viewer introns
2.2 years ago by mrmrwinter ▴ 30
2
votes
6
replies
1.4k
views
Continuing issues with MAKER and SNAP
SNAP zff gff MAKER annotation
2.1 years ago by mrmrwinter ▴ 30
0
votes
6
replies
1.3k
views
Non-standard Genbank format
biopython ugene genbank
2.2 years ago by mrmrwinter ▴ 30
1
vote
1
reply
1.4k
views
Colour tip labels in a tree based on wildcard/expression using ggtree
ggtree colour R phylogeny dendrogram
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 30
2
votes
4
replies
2.6k
views
Combining nanopore libraries
promethion nanopore Assembly
2.2 years ago by mrmrwinter ▴ 30
0
votes
0
replies
947
views
Which ete3 format to parse a newick file with concordance values?
iqtree phylogenetics concordance factors newick
3.7 years ago by mrmrwinter ▴ 30
0
votes
1
reply
846
views
Allow for failed wildcards in Snakemake workflow
snakemake python wildcards
3.8 years ago by mrmrwinter ▴ 30
1
vote
4
replies
1.1k
views
Order assignment given family and genus level in R
r taxomonic assignment transformation
4.0 years ago by mrmrwinter ▴ 30
3
votes
15
replies
3.2k
views
Less and less genes predicted with each iteration of SNAP/MAKER
maker annotation snap gene prediction genomics
updated 2.6 years ago by ▴ 20 • written 4.1 years ago by ▴ 30
3
votes
9
replies
3.6k
views
If loop in snakemake
shell snakemake if else loop
4.2 years ago by mrmrwinter ▴ 30
5
votes
11
replies
2.0k
views
Counting CDS's in Maker output
annotation maker cds est gene prediction
updated 4.2 years ago by 8.6k • written 4.2 years ago by ▴ 30
1
vote
4
replies
745
views
If/Else loop for grep count
grep if else python snakemake
updated 4.2 years ago by 161k • written 4.2 years ago by ▴ 30
3
votes
2
replies
859
views
Which format to download ESTs for annotation with MAKER?
genome annotation gene prediction
updated 4.2 years ago by 8.6k • written 4.2 years ago by ▴ 30
1
vote
2
replies
627
views
How to omit certain results from GenBank search?
genbank omission annotation protein database
4.2 years ago by mrmrwinter ▴ 30
3
votes
2
replies
2.3k
views
Error: NCBI C++ Exception - Invalid choice selection: NCBI-Seqalign::Score.value.real
blast ncbi terminal software error seqalign
updated 2.7 years ago by • 0 • written 4.6 years ago by ▴ 30
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