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2
votes
3
replies
928
views
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How to summarize the expression of a gene when having expression data from different transcripts of that gene
rnaseq expression
updated 19 months ago by 20k • written 19 months ago by ▴ 90
0
votes
0
replies
420
views
SNV occuring 2 fold more in forward than in reverse reads should be filtered?
Variant-Calling
updated 5 months ago by 44k • written 2.6 years ago by ▴ 90
11
votes
5
replies
7.8k
views
Remove supplementary alignments from a bam file
alignment
updated 3.5 years ago by • 0 • written 4.4 years ago by ▴ 90
0
votes
1
reply
691
views
How to statistically determine if a mutation has an impact on expression individually for one patient
RNA-Seq variant calling
3.6 years ago by jeni ▴ 90
0
votes
3
replies
794
views
Correct number of detected variants by coverage
variant calling
3.8 years ago by jeni ▴ 90
0
votes
3
replies
1.1k
views
Differencial expression analysis between groups determined by two variables
expression microarray clustering
3.9 years ago by jeni ▴ 90
3
votes
6
replies
1.8k
views
Does it make sense to transform expression data to zscore after performing RMA?
microarray expression
updated 2.3 years ago by • 0 • written 3.9 years ago by ▴ 90
0
votes
0
replies
747
views
Is it right to use a low amount of bumphunter permutations?
methylation microarray DMR
3.9 years ago by jeni ▴ 90
0
votes
0
replies
600
views
How to deal with SNPs and INDELs called in hypermutated regions?
variant calling
4.1 years ago by jeni ▴ 90
0
votes
0
replies
653
views
Where to find a list of hypermutated regions for hg19 assembly?
variant calling
4.1 years ago by jeni ▴ 90
2
votes
1
reply
1.1k
views
How to know which genes are favouring or inactivating a pathway in a gene set enrichment analysis
enrichment analysis
updated 4.1 years ago by ★ 3.0k • written 4.1 years ago by ▴ 90
0
votes
0
replies
1.1k
views
Reduce GRanges by different lengths of overlapping, deppending on each compared intervals
GRanges
4.2 years ago by jeni ▴ 90
1
vote
3
replies
3.1k
views
HOMER hg19 not found in config.txt
HOMER motif finding
updated 3.0 years ago by • 0 • written 4.2 years ago by ▴ 90
3
votes
9
replies
1.5k
views
Best practice to find regulatory motifs in a set of sequences
regulatory motif finding
updated 4.2 years ago by ★ 28k • written 4.2 years ago by ▴ 90
3
votes
3
replies
1.3k
views
Best way to call differencially methylated positions taking into account results from both Beta and M values
methylation
updated 4.2 years ago by ★ 3.0k • written 4.2 years ago by ▴ 90
2
votes
5
replies
1.5k
views
VEP is returning MOTIF_NAME values not recognised by Ensembl
snp Ensembl VEP
updated 4.2 years ago by ▴ 270 • written 4.2 years ago by ▴ 90
0
votes
0
replies
840
views
Download all positions where a motif exist from the genome browser
genome
4.2 years ago by jeni ▴ 90
0
votes
6
replies
849
views
Pathways analysis taking into account the number of times a gene is present among several patients
snp
4.3 years ago by jeni ▴ 90
2
votes
2
replies
1.4k
views
Read genotype information with VariantAnnotation
SNP R vcf Bioconductor VariantAnnotation
updated 4.3 years ago by 4.0k • written 4.3 years ago by ▴ 90
0
votes
2
replies
998
views
filter_vep not properly filtering
snp
updated 4.3 years ago by 44k • written 4.3 years ago by ▴ 90
5
votes
6
replies
3.5k
views
Parse VEP VCF with variantAnnotation
snp R
4.3 years ago by jeni ▴ 90
1
vote
4
replies
1.6k
views
Is it right to combine multiple runs downloaded from SRA?
next-gen
4.4 years ago by jeni ▴ 90
0
votes
4
replies
756
views
How to remove reads supporting the same fragment that other reads support
Assembly genome
4.4 years ago by jeni ▴ 90
2
votes
6
replies
3.2k
views
Extract reads with insert size 0 from a bam file
alignment
updated 4.4 years ago by 9.0k • written 4.4 years ago by ▴ 90
0
votes
5
replies
1.0k
views
Transform genomic intervals to genomic positions in an R dataframe
R
4.4 years ago by jeni ▴ 90
0
votes
1
reply
849
views
Plot per base coverage from regions coverage with R
R
updated 4.4 years ago by 5.8k • written 4.4 years ago by ▴ 90
0
votes
2
replies
1.3k
views
Minfi preprocessNoob vs preprocessQuantile normalization for Illumina EPIC array
R Minfi bioconductor
updated 4.7 years ago by 12k • written 4.7 years ago by ▴ 90
0
votes
0
replies
917
views
Get IlluminaHumanMethylationEPICmanifest.bpm file
R Bioconductor
updated 4.7 years ago by 12k • written 4.7 years ago by ▴ 90
0
votes
0
replies
728
views
Get probe names from HTAFeatureSet expression data
R
4.7 years ago by jeni ▴ 90
29 results • Page 1 of 1
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