Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
1.7k
views
Comment: C: Found a raw data file; which -omics technology is this output from?
7.5 years ago by biohack92 ▴ 170
3
votes
5
replies
1.7k
views
Found a raw data file; which -omics technology is this output from?
RNA-Seq rna-seq sequencing next-gen
7.5 years ago by biohack92 ▴ 170
2
votes
1
reply
1.5k
views
How to calculate correlations across two matrices across samples?
statistics R sequencing methylation
updated 7.6 years ago by 20 • written 8.0 years ago by ▴ 170
6
votes
1
reply
3.5k
views
What's the difference between Bioconductor's knownGene and ensGene annotation packages?
R Bioconductor annotation Ensembl
updated 7.9 years ago by 23k • written 8.0 years ago by ▴ 170
4
votes
2
replies
2.1k
views
Is there any reason to analyze plus/minus strands separately in bisulfite seq/methylation data?
bisulfite sequencing methylation
updated 8.0 years ago by ★ 5.1k • written 8.0 years ago by ▴ 170
0
votes
0
replies
2.4k
views
Comment: C: ggbio package only works with h19 genome
8.0 years ago by biohack92 ▴ 170
0
votes
1
reply
2.2k
views
List of exon coordinates from a single Entrez gene ID. Are these exons for alternative splicings of the gene?
genomicranges R Bioconductor
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by ▴ 170
0
votes
0
replies
1.7k
views
Comment: C: Is there any way to determine whether my sequenced data uses 0- or 1-based coord
8.0 years ago by biohack92 ▴ 170
1
vote
2
replies
1.7k
views
Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
sequencing coordinates genome bed bedgraph
updated 8.0 years ago by 35k • written 8.0 years ago by ▴ 170
7
votes
4
replies
2.9k
views
How do you remove coverage outliers in sequencing count data?
bisulfite sequencing qc R quality control
updated 8.0 years ago by 14k • written 8.0 years ago by ▴ 170
0
votes
1
reply
2.9k
views
Comment: C: How do you remove coverage outliers in sequencing count data?
8.0 years ago by biohack92 ▴ 170
0
votes
0
replies
9.1k
views
Comment: C: Running Eigenstrat?
8.5 years ago by biohack92 ▴ 170
0
votes
0
replies
9.1k
views
Comment: C: Running Eigenstrat?
8.5 years ago by biohack92 ▴ 170
20
votes
12
replies
11k
views
8 follow
What is a typical workflow to correlate methylation and expression data?
methylation expression bioconductor R epigenetics
updated 19 months ago by 43k • written 9.7 years ago by ▴ 170
4
votes
8
replies
7.8k
views
How Can I Get Download Genbank Files With Just The Accession Number?
genbank bioperl
updated 8.7 years ago by 20 • written 11.0 years ago by ▴ 170
0
votes
0
replies
4.1k
views
Comment: Comment: How to maintain same color key across multiple heatmaps despite different datase
updated 22 months ago by 43k • written 9.1 years ago by ▴ 170
0
votes
2
replies
4.1k
views
How to maintain same color key across multiple heatmaps despite different datasets using heatmap.3
r heatmap
updated 22 months ago by 43k • written 9.1 years ago by ▴ 170
3
votes
6
replies
3.4k
views
Is this a .bed file? If so, why is it not importing into IGV properly?
bed genomics bam igv
updated 23 months ago by 43k • written 9.1 years ago by ▴ 170
0
votes
1
reply
3.4k
views
Comment: C: Is this a .bed file? If so, why is it not importing into IGV properly?
9.1 years ago by biohack92 ▴ 170
5
votes
4
replies
3.1k
views
How can I look at nonsense mutations in a particular gene in TCGA data?
sequence mutations tcga
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 170
0
votes
0
replies
3.1k
views
Comment: Comment: How can I look at nonsense mutations in a particular gene in TCGA data?
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 170
0
votes
0
replies
4.6k
views
Comment: C: Minfi Package - Illumina 450K Methylation Array - Editing Idat Files
9.5 years ago by biohack92 ▴ 170
0
votes
0
replies
2.0k
views
Comment: C: What is RGsetex and Msetex in the minfi package?
9.7 years ago by biohack92 ▴ 170
1
vote
2
replies
2.0k
views
What is RGsetex and Msetex in the minfi package?
R bioconductor methylation
updated 2.3 years ago by 43k • written 9.7 years ago by ▴ 170
3
votes
1
reply
13k
views
How do I get gene annotation for probes on Illumina's HM450k arrays in FDb.InfiniumMethylation.hg19?
methylation microarray r bioconductor R
updated 10.0 years ago by 49k • written 10.0 years ago by ▴ 170
1
vote
1
reply
3.4k
views
Is there a standard to the range/breaks in z-score coloring for microarray expression data?
R
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 170
0
votes
1
reply
7.8k
views
Comment: C: How Can I Get Download Genbank Files With Just The Accession Number?
11.0 years ago by biohack92 ▴ 170
3
votes
2
replies
2.0k
views
Help! I Can Successfully Run A Blastp Search In Bioperl But I Want To Also Perform Blastn.
blast perl
11.0 years ago by biohack92 ▴ 170
0
votes
0
replies
5.1k
views
Comment: C: Need Help Interpreting The Percent Identity From Blat M8/9 Output
11.5 years ago by biohack92 ▴ 170
0
votes
0
replies
5.1k
views
Comment: C: Need Help Interpreting The Percent Identity From Blat M8/9 Output
11.5 years ago by biohack92 ▴ 170
7
votes
6
replies
5.1k
views
Need Help Interpreting The Percent Identity From Blat M8/9 Output
blat alignment
updated 11.5 years ago by 11k • written 11.5 years ago by ▴ 170
31 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6