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Comment: Comment: From VCF to BEAGLE format with multiple chromosomes
11 months ago by Begonia_pavonina ▴ 150
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1
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1.4k
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Comment: Comment: From VCF to BEAGLE format with multiple chromosomes
12 months ago by Begonia_pavonina ▴ 150
2
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1
reply
759
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Calculate the kinship matrix from NGS data
PCangsd kinship BEAGLE ANGSD
updated 13 months ago by 10k • written 13 months ago by ▴ 150
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0
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763
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How to get BEAGLE files from VCF with angsd?
angsd vcf populationgenetics beagle pcangsd
13 months ago by Begonia_pavonina ▴ 150
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1
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967
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Comment: Comment: Using vcfR to group variants per annotations
14 months ago by Begonia_pavonina ▴ 150
3
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3
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967
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Using vcfR to group variants per annotations
vcf vcfR R
updated 14 months ago by ★ 2.0k • written 14 months ago by ▴ 150
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0
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1.3k
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Comment: Comment: Filter out overlapping deletions from a VCF file.
15 months ago by Begonia_pavonina ▴ 150
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1
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1.3k
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Comment: Comment: Filter out overlapping deletions from a VCF file.
15 months ago by Begonia_pavonina ▴ 150
1
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4
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1.3k
views
Filter out overlapping deletions from a VCF file.
vcf bcftools gvcf
15 months ago by Begonia_pavonina ▴ 150
0
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4
replies
1.4k
views
From VCF to BEAGLE format with multiple chromosomes
vcf vcftools beagle gvcf
11 months ago by Begonia_pavonina ▴ 150
0
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0
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404
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Plot Phylogenetic tree with traits in Biopython
Biopython Phylo Python Phylogeny
18 months ago by Begonia_pavonina ▴ 150
1
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1
reply
1.1k
views
Labels colors in Bio.Phylo
Bio.Phylo Python BioPython
updated 19 months ago by 3.2k • written 19 months ago by ▴ 150
1
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0
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1.1k
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Comment: Comment: Bootstraps values in iqtree
19 months ago by Begonia_pavonina ▴ 150
3
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2
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1.1k
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Bootstraps values in iqtree
iqtree
19 months ago by Begonia_pavonina ▴ 150
5
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4
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1.8k
views
IQ-TREE stuck in selecting a substitution model with ModelFinder
substitution ModelFInder model IQ-TREE
updated 11 months ago by ▴ 860 • written 22 months ago by ▴ 150
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1
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1.8k
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Comment: Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
22 months ago by Begonia_pavonina ▴ 150
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2
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1.5k
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Answer: Answer: GenotypeGVCF too many genotypes from pooled samples
22 months ago by Begonia_pavonina ▴ 150
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0
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7.8k
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Comment: Comment: Question about ROH analysis by Plink 1.9
23 months ago by Begonia_pavonina ▴ 150
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0
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4.3k
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Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Begonia_pavonina ▴ 150
0
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1
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4.3k
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Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Begonia_pavonina ▴ 150
0
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1
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4.3k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Begonia_pavonina ▴ 150
0
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2
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4.3k
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Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Begonia_pavonina ▴ 150
7
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12
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4.3k
views
Snakemake 'Unexpected keyword ref in rule definition'
snakemake python
updated 2.3 years ago by 21k • written 2.3 years ago by ▴ 150
0
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1
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4.3k
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Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
2.3 years ago by Begonia_pavonina ▴ 150
0
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0
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806
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Comment: Comment: Multiple samples in PLINK
2.3 years ago by Begonia_pavonina ▴ 150
1
vote
2
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806
views
Multiple samples in PLINK
gvcf plink roh variants
2.3 years ago by Begonia_pavonina ▴ 150
2
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0
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3.7k
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Comment: Comment: gVCF files into Plink!
2.3 years ago by Begonia_pavonina ▴ 150
0
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0
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1.3k
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Comment: Comment: Confused about PED and MAP file
2.3 years ago by Begonia_pavonina ▴ 150
1
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2
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1.3k
views
Confused about PED and MAP file
PED PLINK MAP detectRUNS
2.3 years ago by Begonia_pavonina ▴ 150
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0
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7.8k
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Comment: Comment: Question about ROH analysis by Plink 1.9
2.4 years ago by Begonia_pavonina ▴ 150
0
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0
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458
views
Label groups with samples names in snpgdsDrawTree (SNPRelate package)
SNPRelate
2.5 years ago by Begonia_pavonina ▴ 150
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0
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2.0k
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Comment: Comment: No header in VCF file
2.5 years ago by Begonia_pavonina ▴ 150
1
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2
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2.0k
views
No header in VCF file
VCF bcftools header
2.5 years ago by Begonia_pavonina ▴ 150
0
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0
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752
views
Comment: Comment: Plotting chromosomes and target capture baits
2.7 years ago by Begonia_pavonina ▴ 150
1
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2
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752
views
Plotting chromosomes and target capture baits
plotting target_capture Hyb-Seq R
2.7 years ago by Begonia_pavonina ▴ 150
0
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1
reply
2.1k
views
Missing read group in BAM files
BWA ValidateSamFile BAM GATK HybPiper
updated 2.7 years ago by 14k • written 2.7 years ago by ▴ 150
2
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1
reply
1.0k
views
Find and replace the RNAME field in BAM/SAM file
samtools bam loop sed sam
updated 3.0 years ago by 142k • written 3.0 years ago by ▴ 150
0
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0
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441
views
KeyError in the pipeline SECAPR
SECAPR Hyb-Seq locus_selection Python Key_error
3.0 years ago by Begonia_pavonina ▴ 150
0
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0
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526
views
SECAPR issue
SECAPR reads trimmomatic pipeline alignement
3.1 years ago by Begonia_pavonina ▴ 150
3
votes
8
replies
2.4k
views
blast2gff IndexError: list index out of range
blast2gff GFF BLAST Python blastn
updated 2.8 years ago by • 0 • written 3.7 years ago by ▴ 150
0
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0
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2.9k
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Comment: C: merging overlaping ranges with GenomicRanges
3.6 years ago by Begonia_pavonina ▴ 150
0
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0
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2.9k
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Comment: C: merging overlaping ranges with GenomicRanges
3.6 years ago by Begonia_pavonina ▴ 150
5
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7
replies
1.2k
views
Replace FASTA file headers
fasta FASTA sed loop
updated 3.6 years ago by 21k • written 3.6 years ago by ▴ 150
0
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0
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1.7k
views
Comment: C: Keep metadata gc column using GenomicRanges
3.6 years ago by Begonia_pavonina ▴ 150
0
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1
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1.2k
views
Comment: C: Replace FASTA file headers
3.6 years ago by Begonia_pavonina ▴ 150
2
votes
2
replies
1.7k
views
Keep metadata gc column using GenomicRanges
ranges Iranges R
3.6 years ago by Begonia_pavonina ▴ 150
4
votes
4
replies
2.9k
views
merging overlaping ranges with GenomicRanges
R blast GenomicRanges range
updated 3.6 years ago by 22k • written 3.6 years ago by ▴ 150
0
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0
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703
views
Answer: A: How to build my resource-bundle for variant recalibrator?
3.6 years ago by Begonia_pavonina ▴ 150
3
votes
1
reply
2.1k
views
Length of scaffolds in a FASTA file
fasta genome bash scaffold
updated 3.7 years ago by 21k • written 3.7 years ago by ▴ 150
0
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0
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1.4k
views
Comment: C: edit FASTA file according to range positions
3.7 years ago by Begonia_pavonina ▴ 150
129 results • Page 2 of 3
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