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2
votes
3
replies
3.4k
views
Reads That Are Used In De Novo Assemblies That Did Not Map To Contigs
bowtie assembly
updated 3.7 years ago by 22k • written 11.1 years ago by ▴ 230
2
votes
4
replies
4.5k
views
What program do I use to generate a single contig given a set of short contigs and the template?
Assembly sequence alignment
updated 16 months ago by 43k • written 8.8 years ago by ▴ 230
12
votes
5
replies
15k
views
How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
exon sam bam reads gff
updated 4.8 years ago by • 0 • written 10.9 years ago by ▴ 230
4
votes
4
replies
4.5k
views
Given Sequences, How To Compute A Low Complexity Score For Each Sequence?
sequence blast perl
updated 8.5 years ago by 20 • written 10.5 years ago by ▴ 230
0
votes
0
replies
4.5k
views
Comment: Comment: What program do I use to generate a single contig given a set of short contigs a
updated 16 months ago by 43k • written 8.8 years ago by ▴ 230
2
votes
0
replies
2.1k
views
Answer: Answer: Does trinity discard reads shorter than 25-mer?
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 230
5
votes
2
replies
2.1k
views
Does trinity discard reads shorter than 25-mer?
Trinity Denovo-Assembly RNA-Seq
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 230
4
votes
1
reply
2.2k
views
Can I download ENSEMBL gtf whose release number is different from that of the corresponding genome as long as the assembly is identical?
genome annotation ensembl
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 230
1
vote
7
replies
2.7k
views
Without genome reference, how to find exon-exon junctions given isoforms
RNA-Seq
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 230
0
votes
1
reply
2.7k
views
Comment: Comment: Without genome reference, how to find exon-exon junctions given isoforms
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 230
0
votes
1
reply
2.7k
views
Comment: Comment: Without genome reference, how to find exon-exon junctions given isoforms
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 230
3
votes
1
reply
1.9k
views
Explanation for strange kmer enrichment at the end of the RNA-seq reads
RNA-Seq
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 230
4
votes
2
replies
2.2k
views
How to account for between-subjects variability in this particular RNA-seq study?
RNA-Seq
updated 2.5 years ago by 43k • written 9.9 years ago by ▴ 230
10
votes
1
reply
3.5k
views
How Is -U Flag(Compressed) Different From -B Flag In Samtools?
samtools
updated 10.1 years ago by ▴ 500 • written 10.1 years ago by ▴ 230
5
votes
2
replies
2.6k
views
What Is The Difference Between U133A And U95 Chip?
microarray affymetrix
updated 10.3 years ago by ▴ 20 • written 10.3 years ago by ▴ 230
4
votes
2
replies
2.7k
views
Interesting Math Problem: How Do You "Un"-Sizefactor The Normalized Counts In Deseq?
deseq rna-seq expression
updated 10.4 years ago by 7.8k • written 10.4 years ago by ▴ 230
9
votes
1
reply
4.8k
views
Combining P Values And Adjust For Multiple Hypotheses Or The Other Way Around?
updated 10.5 years ago by 24k • written 10.5 years ago by ▴ 230
4
votes
0
replies
5.1k
views
Answer: A: What Are Your Most-Used Public Data Repositories?
10.7 years ago by lwc628 ▴ 230
0
votes
1
reply
6.0k
views
Comment: C: Is It Safe To Remove Exact Duplicate Reads In The Denovo Transcriptome Assembly?
11.0 years ago by lwc628 ▴ 230
0
votes
1
reply
3.9k
views
Comment: C: How Is It Possible For Adapter Sequence To Be Present At The Beginning Of The Re
11.0 years ago by lwc628 ▴ 230
2
votes
3
replies
3.9k
views
How Is It Possible For Adapter Sequence To Be Present At The Beginning Of The Reads?
adaptor fastq
updated 11.0 years ago by 4.8k • written 11.0 years ago by ▴ 230
8
votes
5
replies
6.0k
views
Is It Safe To Remove Exact Duplicate Reads In The Denovo Transcriptome Assembly?
transcriptome trinity duplicates
updated 11.0 years ago by 14k • written 11.0 years ago by ▴ 230
6
votes
5
replies
3.3k
views
A Question About Samtools Flag "87"
samtools
updated 11.2 years ago by ★ 2.5k • written 11.2 years ago by ▴ 230
0
votes
0
replies
3.3k
views
Comment: C: A Question About Samtools Flag "87"
11.2 years ago by lwc628 ▴ 230
0
votes
0
replies
3.3k
views
Comment: C: A Question About Samtools Flag "87"
11.2 years ago by lwc628 ▴ 230
12
votes
6
replies
6.0k
views
Almost Nothing Mapped Using Bwa Or Bowtie. But A Lot Of Mapping In Blast
blast bwa bowtie
updated 11.4 years ago by 100k • written 11.4 years ago by ▴ 230
26 results • Page 1 of 1
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