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3
votes
1
reply
1.8k
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Answer: A: Heatmaps by pheatmap
4.4 years ago by k.nirmalraman ★ 1.1k
0
votes
0
replies
18k
views
Comment: C: Can We Compare Two Different Rna-Seq Experiments?
updated 6.4 years ago by 45k • written 11.7 years ago by ★ 1.1k
3
votes
5
replies
13k
views
Ggplot2 : Plotting Multiple Bar Against Same Y Axis. Visualization Of Samples!
visualization
updated 7.7 years ago by 20 • written 12.1 years ago by ★ 1.1k
7
votes
6
replies
19k
views
6 follow
Bowtie & Tophat
bowtie tophat cufflinks
updated 8.3 years ago by • 0 • written 12.2 years ago by ★ 1.1k
25
votes
13
replies
20k
views
6 follow
Is There A Easy Way To Find The Gene Annotations For Features In Bed File?
gene annotation bed
updated 8.9 years ago by ★ 9.6k • written 12.6 years ago by ★ 1.1k
2
votes
4
replies
7.0k
views
Fastx-Toolkit: Fastx_Barcode_Splitter
barcode split
updated 9.6 years ago by ▴ 40 • written 11.7 years ago by ★ 1.1k
6
votes
10
replies
7.3k
views
Mapping Of Bisulfite Sequencing Reads
sequencing mapping
updated 2.5 years ago by 45k • written 11.8 years ago by ★ 1.1k
3
votes
4
replies
6.2k
views
3' Rna Seq Pipeline
rnaseq pipeline deseq bowtie visualization igv
updated 10.2 years ago by 20 • written 12.1 years ago by ★ 1.1k
1
vote
2
replies
3.1k
views
How Does Cuffdiff Identify The Bam File To Corresponding Condition Before Performing The De Analysis?
cuffdiff
updated 10.4 years ago by 20 • written 11.5 years ago by ★ 1.1k
1
vote
4
replies
11k
views
Gsva Analysis In R: Unable To Identify Method For Function
enrichment r
updated 10.5 years ago by • 0 • written 12.1 years ago by ★ 1.1k
12
votes
7
replies
13k
views
How To Get Annotation For Bed File From Another Bed File
bedtools annotation
updated 10.6 years ago by 20 • written 12.6 years ago by ★ 1.1k
28
votes
11
replies
21k
views
6 follow
Scatter Plot For Correlations With Heatdensity
visualization visualization r
updated 3.4 years ago by 45k • written 12.0 years ago by ★ 1.1k
3
votes
1
reply
3.5k
views
Circos: Plotting Various Transcripts Of A Gene?
updated 11.1 years ago by 20 • written 11.2 years ago by ★ 1.1k
0
votes
0
replies
4.9k
views
Comment: C: Transcript Models In Circos
11.2 years ago by k.nirmalraman ★ 1.1k
7
votes
4
replies
7.8k
views
Strategy For Rna Seq Normalization Across Different Tissue Samples With Different Cell Density.
rna-seq normalization
updated 11.3 years ago by 8.3k • written 11.4 years ago by ★ 1.1k
0
votes
0
replies
4.9k
views
Comment: C: Mouse Genome Build And Gtf Conflict In Tophat Downloads
11.3 years ago by k.nirmalraman ★ 1.1k
4
votes
2
replies
4.9k
views
Mouse Genome Build And Gtf Conflict In Tophat Downloads
chromosome
updated 11.3 years ago by 105k • written 11.3 years ago by ★ 1.1k
0
votes
0
replies
2.5k
views
Geneset Enrichment Analysis With Refseqid
enrichment
updated 11.3 years ago by 20 • written 12.1 years ago by ★ 1.1k
7
votes
3
replies
5.5k
views
Fitting Distribution Of The Gene Expression Levels Of Rna Seq Data
11.3 years ago by k.nirmalraman ★ 1.1k
1
vote
0
replies
5.5k
views
Comment: C: Fitting Distribution Of The Gene Expression Levels Of Rna Seq Data
11.3 years ago by k.nirmalraman ★ 1.1k
0
votes
0
replies
7.8k
views
Comment: C: Strategy For Rna Seq Normalization Across Different Tissue Samples With Differen
11.4 years ago by k.nirmalraman ★ 1.1k
5
votes
5
replies
7.1k
views
I Am Trying To Run Fimo From Meme Suite
meme motif
updated 11.4 years ago by 20 • written 12.6 years ago by ★ 1.1k
3
votes
4
replies
12k
views
Is It Valid To Convert A Fold Change Matrix Into Z Score?
updated 11.5 years ago by 27k • written 11.5 years ago by ★ 1.1k
0
votes
1
reply
12k
views
Comment: C: Is It Valid To Convert A Fold Change Matrix Into Z Score?
11.5 years ago by k.nirmalraman ★ 1.1k
0
votes
0
replies
3.1k
views
Comment: C: How Does Cuffdiff Identify The Bam File To Corresponding Condition Before Perfor
11.5 years ago by k.nirmalraman ★ 1.1k
0
votes
0
replies
7.0k
views
Comment: C: Tophat - Htseq Count? How Can I Improve The Mapping Percentage For Single End R
11.6 years ago by k.nirmalraman ★ 1.1k
0
votes
0
replies
7.0k
views
Comment: C: Tophat - Htseq Count? How Can I Improve The Mapping Percentage For Single End R
11.6 years ago by k.nirmalraman ★ 1.1k
0
votes
0
replies
7.0k
views
Comment: C: Tophat - Htseq Count? How Can I Improve The Mapping Percentage For Single End R
11.6 years ago by k.nirmalraman ★ 1.1k
2
votes
7
replies
7.0k
views
Tophat - Htseq Count? How Can I Improve The Mapping Percentage For Single End Reads
htseq tophat rnaseq
11.6 years ago by k.nirmalraman ★ 1.1k
3
votes
2
replies
24k
views
Is It Possible To Fix The Scale In Ggplot?
heatmap r
updated 11.6 years ago by ▴ 330 • written 11.6 years ago by ★ 1.1k
0
votes
0
replies
6.7k
views
Comment: C: Tophat2 And Bowtie2
11.6 years ago by k.nirmalraman ★ 1.1k
1
vote
2
replies
6.7k
views
Comment: C: Tophat2 And Bowtie2
11.6 years ago by k.nirmalraman ★ 1.1k
0
votes
1
reply
6.1k
views
Comment: C: How To Compare Two Experimental Observations With Different Conditions And Same
11.6 years ago by k.nirmalraman ★ 1.1k
1
vote
7
replies
6.1k
views
How To Compare Two Experimental Observations With Different Conditions And Same Control?
normalization comparison statistics
11.6 years ago by k.nirmalraman ★ 1.1k
0
votes
1
reply
6.1k
views
Comment: C: How To Compare Two Experimental Observations With Different Conditions And Same
11.7 years ago by k.nirmalraman ★ 1.1k
18
votes
7
replies
18k
views
Can We Compare Two Different Rna-Seq Experiments?
rna-seq normalization
updated 11.7 years ago by 4.8k • written 12.2 years ago by ★ 1.1k
0
votes
0
replies
7.3k
views
Answer: A: Mapping Of Bisulfite Sequencing Reads
11.7 years ago by k.nirmalraman ★ 1.1k
0
votes
0
replies
7.0k
views
Comment: C: Fastx-Toolkit: Fastx_Barcode_Splitter
11.7 years ago by k.nirmalraman ★ 1.1k
0
votes
0
replies
8.1k
views
Comment: C: Rna Seq: Alignment Pipeline Using Tophat - Opinion Pls!
11.7 years ago by k.nirmalraman ★ 1.1k
0
votes
0
replies
8.1k
views
Comment: C: Rna Seq: Alignment Pipeline Using Tophat - Opinion Pls!
11.7 years ago by k.nirmalraman ★ 1.1k
0
votes
1
reply
8.1k
views
Comment: C: Rna Seq: Alignment Pipeline Using Tophat - Opinion Pls!
11.7 years ago by k.nirmalraman ★ 1.1k
8
votes
8
replies
8.1k
views
Rna Seq: Alignment Pipeline Using Tophat - Opinion Pls!
tophat alignment rnaseq bowtie pipeline
updated 11.7 years ago by 105k • written 11.7 years ago by ★ 1.1k
0
votes
1
reply
8.1k
views
Comment: C: Rna Seq: Alignment Pipeline Using Tophat - Opinion Pls!
11.7 years ago by k.nirmalraman ★ 1.1k
0
votes
0
replies
3.2k
views
Comment: C: Bowtie Alignment
11.7 years ago by k.nirmalraman ★ 1.1k
13
votes
6
replies
8.5k
views
Fasta Length
fasta length
updated 11.8 years ago by 24k • written 11.8 years ago by ★ 1.1k
11
votes
6
replies
12k
views
Deseq: Multiple Conditions Testing
differential-expression rnaseq differential-expression
updated 12.0 years ago by 8.3k • written 12.0 years ago by ★ 1.1k
4
votes
2
replies
6.2k
views
The Best Visualization For Go Term Linkage
go visualization
updated 12.0 years ago by ★ 2.9k • written 12.0 years ago by ★ 1.1k
4
votes
1
reply
12k
views
Gene Expression Data Hierarchical Clustering, Plot Heat Map With Ggplot
heatmap clustering
updated 12.0 years ago by 49k • written 12.0 years ago by ★ 1.1k
0
votes
1
reply
12k
views
Comment: C: Deseq: Multiple Conditions Testing
12.0 years ago by k.nirmalraman ★ 1.1k
2
votes
0
replies
13k
views
Answer: A: Deseq Question - Input Normalized Read Counts
12.0 years ago by k.nirmalraman ★ 1.1k
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