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1
vote
2
replies
7.9k
views
Gene feature information missing in Stringtie merged assembly
RNA-Seq Assembly gtf
updated 7 weeks ago by ▴ 90 • written 6.3 years ago by ▴ 160
2
votes
1
reply
444
views
Too many contigs in Spades output
spades Assembly
updated 3 months ago by 154k • written 3 months ago by ▴ 160
1
vote
1
reply
1.1k
views
Process Truncated fastq file
fastqc fastq
updated 23 months ago by 154k • written 23 months ago by ▴ 160
1
vote
3
replies
1.1k
views
Zero Mapping rate
bowtie mapping
updated 2.2 years ago by ★ 1.9k • written 2.2 years ago by ▴ 160
3
votes
1
reply
1.1k
views
Fastqc lsequence duplication and per base sequence content failed
RNA-seq fastqc
updated 2.6 years ago by 154k • written 2.6 years ago by ▴ 160
0
votes
1
reply
1.0k
views
Genes near SNP within certain window frame and distance
bedops bedtools
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 160
0
votes
1
reply
906
views
Compare population structure results
plots circlize dendextend R
updated 2.8 years ago by ▴ 120 • written 2.8 years ago by ▴ 160
0
votes
1
reply
1.4k
views
Modify color in pie charts on a geographical map
ggplot
2.9 years ago by waqaskhokhar999 ▴ 160
0
votes
0
replies
1.4k
views
Answer: Answer: Modify color in pie charts on a geographical map
2.9 years ago by waqaskhokhar999 ▴ 160
4
votes
4
replies
3.7k
views
strandness of paired-end data
RNA-Seq featureCounts
updated 3.0 years ago by ★ 4.4k • written 7.1 years ago by ▴ 160
3
votes
10
replies
3.3k
views
Run ASTALAVISTA for large number of files
RNA-Seq alternative splicing
updated 3.0 years ago by • 0 • written 6.1 years ago by ▴ 160
0
votes
0
replies
737
views
Number of PCA for GWAS
GWAS PCA
3.1 years ago by waqaskhokhar999 ▴ 160
1
vote
1
reply
1.0k
views
Heatmap of samples without replicates
Heatmap
updated 3.1 years ago by ★ 1.9k • written 3.1 years ago by ▴ 160
1
vote
6
replies
3.9k
views
Convert the genotype format from numeric to letters
SNP vcf
updated 3.2 years ago by • 0 • written 6.5 years ago by ▴ 160
0
votes
0
replies
765
views
Change colors of each histogram in correlation and phenotypic distribution plot
Histogram
3.2 years ago by waqaskhokhar999 ▴ 160
0
votes
0
replies
1.2k
views
Comment: Comment: Stringtie skips some reference genes
3.2 years ago by waqaskhokhar999 ▴ 160
0
votes
2
replies
1.2k
views
Stringtie skips some reference genes
Stringtie Assembly RNA-seq
3.2 years ago by waqaskhokhar999 ▴ 160
0
votes
0
replies
8.5k
views
Comment: Comment: How to make Q-Q plots for different models at a single chart using R?
4.0 years ago by waqaskhokhar999 ▴ 160
0
votes
0
replies
1.7k
views
Minor Allele Frequency (MAF) Filtering differences: Gappet vs Tassel
MAF GWAS
updated 4.3 years ago by 154k • written 4.3 years ago by ▴ 160
0
votes
0
replies
2.7k
views
Comment: C: Plot GWAS p value distribution for multiple traits
5.1 years ago by waqaskhokhar999 ▴ 160
0
votes
0
replies
2.7k
views
Comment: C: Plot GWAS p value distribution for multiple traits
5.1 years ago by waqaskhokhar999 ▴ 160
0
votes
5
replies
2.7k
views
Plot GWAS p value distribution for multiple traits
GWAS Plotting R
5.1 years ago by waqaskhokhar999 ▴ 160
1
vote
2
replies
1.1k
views
Indentify character and keep corressponding character from bottom two rows
RNA-Seq
updated 5.6 years ago by 13k • written 5.6 years ago by ▴ 160
1
vote
2
replies
1.0k
views
Combine fasta files by matching partial header in specific format
RNA-Seq
5.6 years ago by waqaskhokhar999 ▴ 160
0
votes
1
reply
1.8k
views
Comment: C: Replace ambigious nucleotide with correct nucleotides
5.6 years ago by waqaskhokhar999 ▴ 160
3
votes
4
replies
1.8k
views
Replace ambigious nucleotide with correct nucleotides
next-gen RNA-Seq
updated 5.6 years ago by 45k • written 5.6 years ago by ▴ 160
0
votes
1
reply
2.4k
views
Comment: C: Replace Ambigious codons with Amino acid sequences
updated 5.6 years ago by 45k • written 5.6 years ago by ▴ 160
2
votes
8
replies
2.4k
views
Replace Ambigious codons with Amino acid sequences
RNA-Seq sequence
updated 5.6 years ago by 10k • written 5.6 years ago by ▴ 160
0
votes
0
replies
18k
views
Comment: Comment: How to extract the longest orf?
updated 4.0 years ago by 45k • written 5.6 years ago by ▴ 160
0
votes
1
reply
2.3k
views
Extract longest ORF
RNA-Seq
updated 5.6 years ago by ▴ 1000 • written 5.6 years ago by ▴ 160
0
votes
0
replies
1.5k
views
Comment: C: Alternative of ORFFinder for multiple nucleotide sequences
5.7 years ago by waqaskhokhar999 ▴ 160
2
votes
2
replies
1.5k
views
Alternative of ORFFinder for multiple nucleotide sequences
RNA-Seq ORF translation
updated 5.7 years ago by 154k • written 5.7 years ago by ▴ 160
0
votes
1
reply
1.3k
views
Comment: C: Find gene ids based on genome coordinates
6.0 years ago by waqaskhokhar999 ▴ 160
0
votes
3
replies
1.3k
views
Find gene ids based on genome coordinates
RNA-Seq gene
6.0 years ago by waqaskhokhar999 ▴ 160
0
votes
1
reply
3.3k
views
Comment: C: Run ASTALAVISTA for large number of files
6.0 years ago by waqaskhokhar999 ▴ 160
0
votes
1
reply
3.3k
views
Comment: C: Run ASTALAVISTA for large number of files
6.0 years ago by waqaskhokhar999 ▴ 160
0
votes
0
replies
3.3k
views
Comment: C: Run ASTALAVISTA for large number of files
6.1 years ago by waqaskhokhar999 ▴ 160
11
votes
9
replies
2.7k
views
Remove overlap between Exon and UTR boundaries
RNA-Seq exon UTR
updated 6.1 years ago by 13k • written 6.1 years ago by ▴ 160
0
votes
0
replies
2.7k
views
Comment: C: Remove overlap between Exon and UTR boundaries
6.1 years ago by waqaskhokhar999 ▴ 160
0
votes
1
reply
2.7k
views
Comment: C: Remove overlap between Exon and UTR boundaries
6.1 years ago by waqaskhokhar999 ▴ 160
0
votes
1
reply
2.7k
views
Comment: C: Remove overlap between Exon and UTR boundaries
6.1 years ago by waqaskhokhar999 ▴ 160
0
votes
0
replies
2.1k
views
Comment: C: Splicing QTL plot
6.1 years ago by waqaskhokhar999 ▴ 160
1
vote
3
replies
2.1k
views
Splicing QTL plot
sQTL SNP ggplots R
updated 6.1 years ago by 12k • written 6.1 years ago by ▴ 160
0
votes
1
reply
1.3k
views
plot snps on chromosomes
snps plot
6.1 years ago by waqaskhokhar999 ▴ 160
0
votes
2
replies
23k
views
Comment: A: How to run the Deseq2 tool without replicates.
6.1 years ago by waqaskhokhar999 ▴ 160
5
votes
2
replies
1.9k
views
Filter transcripts based on CDS length
RNA-Seq annotation
updated 6.1 years ago by ▴ 740 • written 6.1 years ago by ▴ 160
0
votes
1
reply
2.3k
views
Comment: C: Identify transcripts code for longest protein from gene annotation file
6.2 years ago by waqaskhokhar999 ▴ 160
0
votes
1
reply
2.3k
views
Comment: C: Identify transcripts code for longest protein from gene annotation file
6.2 years ago by waqaskhokhar999 ▴ 160
1
vote
5
replies
2.3k
views
Identify transcripts code for longest protein from gene annotation file
RNA-Seq Reference annotation file
updated 6.2 years ago by 13k • written 6.2 years ago by ▴ 160
5
votes
4
replies
2.6k
views
Convert intron coordinates to gene names
RNA-Seq sqtl
updated 6.2 years ago by 36k • written 6.2 years ago by ▴ 160
100 results • Page 1 of 2
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