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3
votes
0
replies
118
views
Comparing ATAC-seq narrowPeak Files from Chicken and Mouse
liftOver ATAC-seq csaw
updated 2 days ago by 44k • written 2 days ago by ★ 1.2k
9
votes
8
replies
1.1k
views
RNA Contamination Tool for Developing Cell Samples
scRNA contamination SoupX
updated 5 months ago by 44k • written 6 months ago by ★ 1.2k
15
votes
6
replies
1.7k
views
Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
genome bed transcript TSS
8 months ago by Rafael Soler ★ 1.2k
12
votes
8
replies
2.3k
views
How to perform synteny alignments and plots only with a gene?
Comparative Evolution Alignment Synteny Genomics
14 months ago by Rafael Soler ★ 1.2k
3
votes
0
replies
364
views
miRNA-seq count by "ID" or "Alias" using mirBase mmu.gff3
HTSeq miRNA mirBase
18 months ago by Rafael Soler ★ 1.2k
18
votes
7
replies
1.5k
views
How to calculate if statistically a variable of a bulk RNA-seq affects the comparison of interest?
DESeq2 Variable RNA-seq
20 months ago by Rafael Soler ★ 1.2k
12
votes
7
replies
1.2k
views
How DESeq2 formula correction works?
Batch Comparison DESeq2 GLM Formula
updated 20 months ago by 14k • written 20 months ago by ★ 1.2k
9
votes
7
replies
1.0k
views
How to subtract or sum 12 depending on the last and following line using awk?
grep Awk bash
updated 2.1 years ago by 4.6k • written 2.1 years ago by ★ 1.2k
17
votes
15
replies
1.9k
views
Pool or not to pool
DESeq2 Samples Pool Variability
2.1 years ago by Rafael Soler ★ 1.2k
4
votes
2
replies
851
views
Htseq is giving me 0 counts using the GFF3 of miRBase
Counts GFF3 miRNA HTSeq GTF
2.2 years ago by Rafael Soler ★ 1.2k
7
votes
4
replies
1.4k
views
DESeq2 with multiple variable give me different results
factor DESeq2 levels
updated 2.6 years ago by 3.6k • written 2.6 years ago by ★ 1.2k
6
votes
4
replies
1.2k
views
MEME suite compare motifs between species
motifs MEME compare species
2.7 years ago by Rafael Soler ★ 1.2k
1
vote
2
replies
854
views
Tool to predict protein binding to DNA (what exact nitrogenous bases)
DNA Protein Binding
2.7 years ago by Rafael Soler ★ 1.2k
6
votes
2
replies
747
views
miRNA tool for search targets for genes
mirna targets
updated 11 months ago by 44k • written 2.9 years ago by ★ 1.2k
2
votes
4
replies
2.0k
views
Merge 2 GTF using agat avoiding overlapping
Merge GTF GFF agat
updated 3.0 years ago by 8.6k • written 3.0 years ago by ★ 1.2k
21
votes
28
replies
5.2k
views
How to combine 2 incomplete GTF
Cufflinks Cuffcompare GTF Cuffmerge Merge
3.0 years ago by Rafael Soler ★ 1.2k
2
votes
2
replies
729
views
Chicken/Non canonical animal sequencing depth and read length
RNA-Seq Chicken sequencing
3.5 years ago by Rafael Soler ★ 1.2k
6
votes
7
replies
2.2k
views
Why it is not use UMIs for RNA-seq?
RNA-Seq UMIs scRNA-seq
updated 3.5 years ago by ▴ 20 • written 3.5 years ago by ★ 1.2k
0
votes
0
replies
795
views
ATAC-seq quality filtering
ATAC-seq
3.5 years ago by Rafael Soler ★ 1.2k
2
votes
6
replies
2.0k
views
ATAC-seq problem with STAR - Multimapping reads
ATAC-seq ChIP-Seq STAR
3.5 years ago by Rafael Soler ★ 1.2k
2
votes
4
replies
957
views
Computational Biology Programming Course/Book
Programming Course Code scRNA-seq
updated 3.6 years ago by ★ 17k • written 3.6 years ago by ★ 1.2k
3
votes
1
reply
1.9k
views
GSEA preranked with DESeq2 in a RNA-seq
DESeq2 GSEA RNA-seq Preranked
updated 3.6 years ago by 82k • written 3.6 years ago by ★ 1.2k
6
votes
6
replies
3.9k
views
I need help with Starsolo and scRNA-seq
Star scRNA-seq Starsolo RNA-Seq
3.7 years ago by Rafael Soler ★ 1.2k
0
votes
1
reply
799
views
HTSeq --nonunique all does not work
RNA-Seq HTSeq --nonunique
4.2 years ago by Rafael Soler ★ 1.2k
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